Class MultiJac evaluates the Jacobian of a system of equations defined by a residual function supplied by an instance of class OneDim. More...

#include <MultiJac.h>

Inheritance diagram for MultiJac:

[legend]

Detailed Description

Class MultiJac evaluates the Jacobian of a system of equations defined by a residual function supplied by an instance of class OneDim.

The residual function may consist of several linked 1D domains, with different variables in each domain.

Definition at line 24 of file MultiJac.h.

Public Member Functions
void	reset () override
	Reset parameters as needed.

const string	type () const override
	Derived type, corresponding to names registered with SystemJacobianFactory.

void	setValue (size_t row, size_t col, double value) override
	Set a value at the specified row and column of the jacobian triplet vector.

void	initialize (size_t nVars) override
	Called during setup for any processes that need to be completed prior to setup functions used in sundials.

void	setBandwidth (size_t bw) override
	Used to provide system bandwidth for implementations that use banded matrix storage.

void	updateTransient (double rdt, integer *mask) override
	Update the diagonal terms in the Jacobian by using the transient mask \( \alpha \).

void	factorize () override
	Factorize the system matrix.

double &	value (size_t i, size_t j)

double	value (size_t i, size_t j) const

void	solve (const double const b, double const x)

void	solve (const size_t stateSize, double b, double x) override
	Solve a linear system using the system matrix M

int	info () const override
	Get latest status of linear solver.

Public Member Functions inherited from SystemJacobian
virtual const string	type () const =0
	Derived type, corresponding to names registered with SystemJacobianFactory.

virtual void	setValue (size_t row, size_t col, double value)
	Set a value at the specified row and column of the jacobian triplet vector.

virtual void	stateAdjustment (vector< double > &state)
	Adjust the state vector based on the preconditioner, e.g., Adaptive preconditioning uses a strictly positive composition when preconditioning which is handled by this function.

string	preconditionerSide () const
	Get preconditioner application side for CVODES.

virtual void	setPreconditionerSide (const string &preconSide)
	For iterative solvers, set the side where the preconditioner is applied.

virtual void	updatePreconditioner ()
	Transform Jacobian vector and write into preconditioner, P = (I - gamma * J)

virtual void	updateTransient (double rdt, int *mask)
	Update the diagonal terms in the Jacobian by using the transient mask \( \alpha \).

virtual void	solve (const size_t stateSize, double rhs_vector, double output)
	Solve a linear system using the system matrix M

virtual void	reset ()
	Reset parameters as needed.

virtual void	initialize (size_t networkSize)
	Called during setup for any processes that need to be completed prior to setup functions used in sundials.

virtual void	setBandwidth (size_t bw)
	Used to provide system bandwidth for implementations that use banded matrix storage.

virtual void	printPreconditioner ()
	Print preconditioner contents.

virtual void	setGamma (double gamma)
	Set gamma used in preconditioning.

virtual double	gamma ()
	Get gamma used in preconditioning.

virtual void	setAbsoluteTolerance (double atol)
	Set the absolute tolerance in the solver outside of the network initialization.

virtual int	info () const
	Get latest status of linear solver.

double	elapsedTime () const
	Elapsed CPU time spent computing the Jacobian elements.

void	updateElapsed (double evalTime)
	Increase the elapsed time by the specified time.

int	nEvals () const
	Number of Jacobian evaluations.

void	incrementEvals ()
	Increment the number of times the Jacobian has been evaluated.

int	age () const
	Number of times 'incrementAge' has been called since the last evaluation.

void	incrementAge ()
	Increment the Jacobian age.

void	setAge (int age)
	Set the Jacobian age.

void	clearStats ()
	Clear collected stats about number of Jacobian evaluations, CPU time spent on Jacobian updates, and the number of Newton steps that have been taken since updating the Jacobian.

Protected Attributes
BandMatrix	m_mat
	Underlying matrix storage.

vector< double >	m_ssdiag
	Diagonal of the steady-state Jacobian.

Protected Attributes inherited from SystemJacobian
size_t	m_dim
	Dimension of the system.

double	m_gamma = 1.0
	gamma value used in M = I - gamma*J

bool	m_init = false
	bool saying whether or not the system is initialized

double	m_atol = 0
	Absolute tolerance of the ODE solver.

double	m_elapsed = 0.0
	Elapsed CPU time taken to compute the Jacobian.

int	m_nevals = 0
	Number of Jacobian evaluations.

int	m_age = 100000
	Age of the Jacobian (times incrementAge() has been called)

string	m_precon_side = "none"
	For iterative solvers, side of the system to apply the preconditioner on.

Additional Inherited Members
virtual void	factorize ()
	Factorize the system matrix.

Member Function Documentation

◆ reset()

void reset ( )

overridevirtual

Reset parameters as needed.

Reimplemented from SystemJacobian.

Definition at line 12 of file MultiJac.cpp.

◆ type()

const string type ( ) const

inlineoverridevirtual

Derived type, corresponding to names registered with SystemJacobianFactory.

Implements SystemJacobian.

Definition at line 29 of file MultiJac.h.

◆ setValue()

void setValue	(	size_t	row,
		size_t	col,
		double	value
	)

overridevirtual

Set a value at the specified row and column of the jacobian triplet vector.

Parameters

row	row in the jacobian matrix
col	column in the jacobian matrix
value	value of the element at row and col

Reimplemented from SystemJacobian.

Definition at line 30 of file MultiJac.cpp.

◆ initialize()

void initialize ( size_t networkSize )

overridevirtual

Called during setup for any processes that need to be completed prior to setup functions used in sundials.

Parameters

networkSize the number of variables in the associated reactor network

Reimplemented from SystemJacobian.

Definition at line 18 of file MultiJac.cpp.

◆ setBandwidth()

void setBandwidth ( size_t bw )

overridevirtual

Used to provide system bandwidth for implementations that use banded matrix storage.

Ignored if not needed.

Reimplemented from SystemJacobian.

Definition at line 25 of file MultiJac.cpp.

◆ updateTransient()

void updateTransient	(	double	rdt,
		integer *	mask
	)

overridevirtual

Update the diagonal terms in the Jacobian by using the transient mask \( \alpha \).

Parameters

rdt	Reciprocal of the time step [1/s]
mask	Mask for transient terms: 1 if transient, 0 if algebraic.

Reimplemented from SystemJacobian.

Definition at line 38 of file MultiJac.cpp.

◆ factorize()

void factorize ( )

inlineoverridevirtual

Factorize the system matrix.

This method should be called at the end of implementations of updatePreconditioner() and updateTransient().

Reimplemented from SystemJacobian.

Definition at line 34 of file MultiJac.h.

◆ value() [1/2]

double & value	(	size_t	i,
		size_t	j
	)

inline

Definition at line 38 of file MultiJac.h.

◆ value() [2/2]

double value	(	size_t	i,
		size_t	j
	)		const

inline

Definition at line 42 of file MultiJac.h.

◆ solve() [1/2]

void solve	(	const double *const	b,
		double *const	x
	)

inline

Definition at line 46 of file MultiJac.h.

◆ solve() [2/2]

void solve	(	const size_t	stateSize,
		double *	rhs_vector,
		double *	output
	)

inlineoverridevirtual

Solve a linear system using the system matrix M

The matrix M can either be the preconditioner or the transient Jacobian matrix, depending on whether updateTransient() or updatePreconditioner() was called last.

Parameters

[in]	stateSize	length of the rhs and output vectors
[in]	rhs_vector	right hand side vector used in linear system
[out]	output	output vector for solution

Reimplemented from SystemJacobian.

Definition at line 50 of file MultiJac.h.

◆ info()

int info ( ) const

inlineoverridevirtual

Get latest status of linear solver.

Zero indicates success. Meaning of non-zero values is solver dependent.

Reimplemented from SystemJacobian.

Definition at line 54 of file MultiJac.h.

Member Data Documentation

◆ m_mat

BandMatrix m_mat

protected

Underlying matrix storage.

Definition at line 59 of file MultiJac.h.

◆ m_ssdiag

vector<double> m_ssdiag

protected

Diagonal of the steady-state Jacobian.

Definition at line 60 of file MultiJac.h.

The documentation for this class was generated from the following files:

Detailed Description

Public Member Functions

Protected Attributes

Additional Inherited Members

Member Function Documentation

◆ reset()

◆ type()

◆ setValue()

◆ initialize()

◆ setBandwidth()

◆ updateTransient()

◆ factorize()

◆ value() [1/2]

◆ value() [2/2]

◆ solve() [1/2]

◆ solve() [2/2]

◆ info()

Member Data Documentation

◆ m_mat

◆ m_ssdiag