C1 Class Reference

Handles one species in a reaction. More...

#include <StoichManager.h>

Detailed Description

Handles one species in a reaction.

See Stoichiometry

Definition at line 131 of file StoichManager.h.

Public Member Functions
	C1 (size_t rxn=0, size_t ic0=0)
void	incrementSpecies (span< const double > R, span< double > S) const
void	decrementSpecies (span< const double > R, span< double > S) const
void	multiply (span< const double > S, span< double > R) const
void	incrementReaction (span< const double > S, span< double > R) const
void	decrementReaction (span< const double > S, span< double > R) const
void	resizeCoeffs (const map< pair< size_t, size_t >, size_t > &indices)
void	derivatives (span< const double > S, span< const double > R, span< double > jac) const
void	scale (span< const double > R, span< double > out, double factor) const

Private Attributes
size_t	m_rxn
	Reaction number.
size_t	m_ic0
	Species number.
size_t	m_jc0
	Index in derivative triplet vector.

Constructor & Destructor Documentation

C1()

C1 ( size_t rxn = 0, size_t ic0 = 0 )

inline

Definition at line 134 of file StoichManager.h.

Member Function Documentation

incrementSpecies()

void incrementSpecies ( span< const double > R, span< double > S ) const

inline

Definition at line 139 of file StoichManager.h.

decrementSpecies()

void decrementSpecies ( span< const double > R, span< double > S ) const

inline

Definition at line 143 of file StoichManager.h.

multiply()

void multiply ( span< const double > S, span< double > R ) const

inline

Definition at line 147 of file StoichManager.h.

incrementReaction()

void incrementReaction ( span< const double > S, span< double > R ) const

inline

Definition at line 151 of file StoichManager.h.

decrementReaction()

void decrementReaction ( span< const double > S, span< double > R ) const

inline

Definition at line 155 of file StoichManager.h.

resizeCoeffs()

void resizeCoeffs ( const map< pair< size_t, size_t >, size_t > & indices )

inline

Definition at line 159 of file StoichManager.h.

derivatives()

void derivatives ( span< const double > S, span< const double > R, span< double > jac ) const

inline

Definition at line 164 of file StoichManager.h.

scale()

void scale ( span< const double > R, span< double > out, double factor ) const

inline

Definition at line 171 of file StoichManager.h.

Member Data Documentation

m_rxn

size_t m_rxn

private

Reaction number.

Definition at line 177 of file StoichManager.h.

m_ic0

size_t m_ic0

private

Species number.

Definition at line 179 of file StoichManager.h.

m_jc0

size_t m_jc0

private

Index in derivative triplet vector.

Definition at line 181 of file StoichManager.h.

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The documentation for this class was generated from the following file:

• StoichManager.h