Phase information and Phase calculations for vcs. More...

#include <vcs_VolPhase.h>

Collaboration diagram for vcs_VolPhase:

Public Member Functions
	vcs_VolPhase (VCS_SOLVE *owningSolverObject=0)

	vcs_VolPhase (const vcs_VolPhase &b)=delete

vcs_VolPhase &	operator= (const vcs_VolPhase &b)=delete

void	resize (const size_t phaseNum, const size_t numSpecies, const size_t numElem, const char *const phaseName, const double molesInert=0.0)
	The resize() function fills in all of the initial information if it is not given in the constructor. More...

void	elemResize (const size_t numElemConstraints)

void	setMoleFractionsState (const double molNum, const double *const moleFracVec, const int vcsStateStatus)
	Set the moles and/or mole fractions within the phase. More...

void	setMolesFromVCS (const int stateCalc, const double *molesSpeciesVCS=0)
	Set the moles within the phase. More...

void	setMolesFromVCSCheck (const int vcsStateStatus, const double molesSpeciesVCS, const double const TPhMoles)
	Set the moles within the phase. More...

void	updateFromVCS_MoleNumbers (const int stateCalc)
	Update the moles within the phase, if necessary. More...

void	sendToVCS_ActCoeff (const int stateCalc, double *const AC)
	Fill in an activity coefficients vector within a VCS_SOLVE object. More...

void	setElectricPotential (const double phi)
	set the electric potential of the phase More...

double	electricPotential () const
	Returns the electric field of the phase. More...

double	GStar_calc_one (size_t kspec) const
	Gibbs free energy calculation for standard state of one species. More...

double	G0_calc_one (size_t kspec) const
	Gibbs free energy calculation at a temperature for the reference state of a species, return a value for one species. More...

double	VolStar_calc_one (size_t kspec) const
	Molar volume calculation for standard state of one species. More...

double	sendToVCS_VolPM (double *const VolPM) const
	Fill in the partial molar volume vector for VCS. More...

void	sendToVCS_GStar (double *const gstar) const
	Fill in the partial molar volume vector for VCS. More...

void	setState_TP (const double temperature_Kelvin, const double pressure_PA)
	Sets the temperature and pressure in this object and underlying ThermoPhase objects. More...

void	setState_T (const double temperature_Kelvin)
	Sets the temperature in this object and underlying ThermoPhase objects. More...

void	sendToVCS_LnActCoeffJac (Array2D &LnACJac_VCS)

void	setPtrThermoPhase (ThermoPhase *tp_ptr)
	Set the pointer for Cantera's ThermoPhase parameter. More...

const ThermoPhase *	ptrThermoPhase () const
	Return a const ThermoPhase pointer corresponding to this phase. More...

double	totalMoles () const
	Return the total moles in the phase. More...

double	molefraction (size_t kspec) const
	Returns the mole fraction of the kspec species. More...

void	setTotalMoles (const double totalMols)
	Sets the total moles in the phase. More...

void	setMolesOutOfDate (int stateCalc=-1)
	Sets the mole flag within the object to out of date. More...

void	setMolesCurrent (int vcsStateStatus)
	Sets the mole flag within the object to be current. More...

const vector_fp &	moleFractions () const
	Return a const reference to the mole fractions stored in the object. More...

double	moleFraction (size_t klocal) const

void	setCreationMoleNumbers (const double *const n_k, const std::vector< size_t > &creationGlobalRxnNumbers)
	Sets the creationMoleNum's within the phase object. More...

const vector_fp &	creationMoleNumbers (std::vector< size_t > &creationGlobalRxnNumbers) const
	Return a const reference to the creationMoleNumbers stored in the object. More...

bool	isIdealSoln () const
	Returns whether the phase is an ideal solution phase. More...

size_t	phiVarIndex () const
	Return the index of the species that represents the the voltage of the phase. More...

void	setPhiVarIndex (size_t phiVarIndex)

vcs_SpeciesProperties *	speciesProperty (const size_t kindex)
	Retrieve the kth Species structure for the species belonging to this phase. More...

int	exists () const
	int indicating whether the phase exists or not More...

void	setExistence (const int existence)
	Set the existence flag in the object. More...

size_t	spGlobalIndexVCS (const size_t spIndex) const
	Return the Global VCS index of the kth species in the phase. More...

void	setSpGlobalIndexVCS (const size_t spIndex, const size_t spGlobalIndex)
	set the Global VCS index of the kth species in the phase More...

void	setTotalMolesInert (const double tMolesInert)
	Sets the total moles of inert in the phase. More...

double	totalMolesInert () const
	Returns the value of the total kmol of inert in the phase. More...

size_t	elemGlobalIndex (const size_t e) const
	Returns the global index of the local element index for the phase. More...

void	setElemGlobalIndex (const size_t eLocal, const size_t eGlobal)
	sets a local phase element to a global index value More...

size_t	nElemConstraints () const
	Returns the number of element constraints. More...

std::string	elementName (const size_t e) const
	Name of the element constraint with index `e`. More...

int	elementType (const size_t e) const
	Type of the element constraint with index `e`. More...

size_t	transferElementsFM (const ThermoPhase *const tPhase)
	Transfer all of the element information from the ThermoPhase object to the vcs_VolPhase object. More...

const Array2D &	getFormulaMatrix () const
	Get a constant form of the Species Formula Matrix. More...

int	speciesUnknownType (const size_t k) const
	Returns the type of the species unknown. More...

int	elementActive (const size_t e) const

size_t	nSpecies () const
	Return the number of species in the phase. More...

std::string	eos_name () const
	Return the name corresponding to the equation of state. More...

Public Attributes
size_t	VP_ID_
	Original ID of the phase in the problem. More...

bool	m_singleSpecies
	If true, this phase consists of a single species. More...

bool	m_gasPhase
	If true, this phase is a gas-phase like phase. More...

int	m_eqnState
	Type of the equation of state. More...

size_t	ChargeNeutralityElement
	This is the element number for the charge neutrality condition of the phase. More...

int	p_activityConvention
	Convention for the activity formulation. More...

std::string	PhaseName
	String name for the phase. More...

Private Member Functions
void	setMoleFractions (const double *const xmol)
	Set the mole fractions from a conventional mole fraction vector. More...

void	_updateActCoeff () const
	Evaluate the activity coefficients at the current conditions. More...

void	_updateGStar () const
	Gibbs free energy calculation for standard states. More...

void	_updateG0 () const
	Gibbs free energy calculation at a temperature for the reference state of each species. More...

void	_updateVolStar () const
	Molar volume calculation for standard states. More...

double	_updateVolPM () const
	Calculate the partial molar volumes of all species and return the total volume. More...

void	_updateLnActCoeffJac ()
	Evaluation of Activity Coefficient Jacobians. More...

void	_updateMoleFractionDependencies ()
	Updates the mole fraction dependencies. More...

Private Attributes
VCS_SOLVE *	m_owningSolverObject
	Backtrack value of VCS_SOLVE *. More...

size_t	m_numElemConstraints
	Number of element constraints within the problem. More...

std::vector< std::string >	m_elementNames
	vector of strings containing the element constraint names More...

vector_int	m_elementActive
	boolean indicating whether an element constraint is active for the current problem More...

vector_int	m_elementType
	Type of the element constraint. More...

Array2D	m_formulaMatrix
	Formula Matrix for the phase. More...

vector_int	m_speciesUnknownType
	Type of the species unknown. More...

std::vector< size_t >	m_elemGlobalIndex
	Index of the element number in the global list of elements stored in VCS_SOLVE. More...

size_t	m_numSpecies
	Number of species in the phase. More...

double	m_totalMolesInert
	Total moles of inert in the phase. More...

bool	m_isIdealSoln
	Boolean indicating whether the phase is an ideal solution and therefore its molar-based activity coefficients are uniformly equal to one. More...

int	m_existence
	Current state of existence: More...

int	m_MFStartIndex

std::vector< size_t >	IndSpecies
	Index into the species vectors. More...

std::vector< vcs_SpeciesProperties * >	ListSpeciesPtr
	Vector of Species structures for the species belonging to this phase. More...

ThermoPhase *	TP_ptr
	If we are using Cantera, this is the pointer to the ThermoPhase object. More...

double	v_totalMoles
	Total mols in the phase. units are kmol. More...

vector_fp	Xmol_
	Vector of the current mole fractions for species in the phase. More...

vector_fp	creationMoleNumbers_
	Vector of current creationMoleNumbers_. More...

std::vector< size_t >	creationGlobalRxnNumbers_
	Vector of creation global reaction numbers for the phase stability problem. More...

size_t	m_phiVarIndex
	If the potential is a solution variable in VCS, it acts as a species. More...

double	m_totalVol
	Total Volume of the phase. Units are m**3. More...

vector_fp	SS0ChemicalPotential
	Vector of calculated SS0 chemical potentials for the current Temperature. More...

vector_fp	StarChemicalPotential
	Vector of calculated Star chemical potentials for the current Temperature and pressure. More...

vector_fp	StarMolarVol
	Vector of the Star molar Volumes of the species. units m3 / kmol. More...

vector_fp	PartialMolarVol
	Vector of the Partial molar Volumes of the species. units m3 / kmol. More...

vector_fp	ActCoeff
	Vector of calculated activity coefficients for the current state. More...

Array2D	np_dLnActCoeffdMolNumber
	Vector of the derivatives of the ln activity coefficient wrt to the current mole number multiplied by the current phase moles. More...

int	m_vcsStateStatus
	Status. More...

double	m_phi
	Value of the potential for the phase (Volts) More...

bool	m_UpToDate
	Boolean indicating whether the object has an up-to-date mole number vector and potential with respect to the current vcs state calc status. More...

bool	m_UpToDate_AC
	Boolean indicating whether activity coefficients are up to date. More...

bool	m_UpToDate_VolStar
	Boolean indicating whether Star volumes are up to date. More...

bool	m_UpToDate_VolPM
	Boolean indicating whether partial molar volumes are up to date. More...

bool	m_UpToDate_GStar
	Boolean indicating whether GStar is up to date. More...

bool	m_UpToDate_G0
	Boolean indicating whether G0 is up to date. More...

double	Temp_
	Current value of the temperature for this object, and underlying objects. More...

double	Pres_
	Current value of the pressure for this object, and underlying objects. More...

Detailed Description

Phase information and Phase calculations for vcs.

Each phase in a vcs calculation has a vcs_VolPhase object associated with it. This object helps to coordinate property evaluations for species within the phase. Usually these evaluations must be carried out on a per phase basis. However, vcs frequently needs per species quantities. Therefore, we need an interface layer between vcs and Cantera's ThermoPhase.

The species stay in the same ordering within this structure. The vcs algorithm will change the ordering of species in the global species list. However, the indexing of species in this list stays the same. This structure contains structures that point to the species belonging to this phase in the global vcs species list.

This object is considered not to own the underlying Cantera ThermoPhase object for the phase.

This object contains an idea of the temperature and pressure. It checks to see if if the temperature and pressure has changed before calling underlying property evaluation routines.

The object contains values for the electric potential of a phase. It coordinates the evaluation of properties wrt when the electric potential of a phase has changed.

The object knows about the mole fractions of the phase. It controls the values of mole fractions, and coordinates the property evaluation wrt to changes in the mole fractions. It also will keep track of the likely values of mole fractions in multicomponent phases even when the phase doesn't actually exist within the thermo program.

The object knows about the total moles of a phase. It checks to see if the phase currently exists or not, and modifies its behavior accordingly.

Activity coefficients and volume calculations are lagged. They are only called when they are needed (and when the state has changed so that they need to be recalculated).

Definition at line 81 of file vcs_VolPhase.h.

Member Function Documentation

◆ resize()

void resize	(	const size_t	phaseNum,
		const size_t	numSpecies,
		const size_t	numElem,
		const char *const	phaseName,
		const double	molesInert = `0.0`
	)

The resize() function fills in all of the initial information if it is not given in the constructor.

Parameters

phaseNum	index of the phase in the vcs problem
numSpecies	Number of species in the phase
phaseName	String name for the phase
molesInert	kmoles of inert in the phase (defaults to zero)

Definition at line 61 of file vcs_VolPhase.cpp.

References AssertThrowMsg, Cantera::npos, VCS_SPECIES_TYPE_MOLNUM, and VCS_STATECALC_OLD.

◆ setMoleFractionsState()

void setMoleFractionsState	(	const double	molNum,
		const double *const	moleFracVec,
		const int	vcsStateStatus
	)

Set the moles and/or mole fractions within the phase.

Parameters

molNum	total moles in the phase
moleFracVec	Vector of input mole fractions
vcsStateStatus	Status flag for this update

Definition at line 233 of file vcs_VolPhase.cpp.

References VCS_PHASE_EXIST_NO, VCS_PHASE_EXIST_YES, VCS_PHASE_EXIST_ZEROEDPHASE, and VCS_STATECALC_TMP.

◆ setMolesFromVCS()

void setMolesFromVCS	(	const int	stateCalc,
		const double *	molesSpeciesVCS = `0`
	)

Set the moles within the phase.

This function takes as input the mole numbers in vcs format, and then updates this object with their values. This is essentially a gather routine.

Parameters

molesSpeciesVCS Array of mole numbers. Note, the indices for species in this array may not be contiguous. IndSpecies[] is needed to gather the species into the local contiguous vector format.

Definition at line 283 of file vcs_VolPhase.cpp.

References AssertThrowMsg, Cantera::npos, VCS_PHASE_EXIST_ALWAYS, VCS_PHASE_EXIST_NO, VCS_PHASE_EXIST_YES, VCS_SPECIES_TYPE_INTERFACIALVOLTAGE, VCS_STATECALC_NEW, and VCS_STATECALC_OLD.

Referenced by VCS_SOLVE::vcs_CalcLnActCoeffJac(), and VCS_SOLVE::vcs_VolTotal().

◆ setMolesFromVCSCheck()

void setMolesFromVCSCheck	(	const int	vcsStateStatus,
		const double *	molesSpeciesVCS,
		const double *const	TPhMoles
	)

Set the moles within the phase.

This function takes as input the mole numbers in vcs format, and then updates this object with their values. This is essentially a gather routine.

Additionally it checks to see that the total moles value in TPhMoles[iplace] is equal to the internally computed value. If this isn't the case, an error exit is carried out.

Parameters

vcsStateStatus	State calc value either `VCS_STATECALC_OLD` or `VCS_STATECALC_NEW`. With any other value nothing is done.
molesSpeciesVCS	array of mole numbers. Note, the indices for species in this array may not be contiguous. IndSpecies[] is needed to gather the species into the local contiguous vector format.
TPhMoles	VCS's array containing the number of moles in each phase.

Definition at line 364 of file vcs_VolPhase.cpp.

References Cantera::vcs_doubleEqual().

Referenced by VCS_SOLVE::vcs_delete_species(), VCS_SOLVE::vcs_reinsert_deleted(), and VCS_SOLVE::vcs_updateVP().

◆ updateFromVCS_MoleNumbers()

void updateFromVCS_MoleNumbers ( const int stateCalc )

Update the moles within the phase, if necessary.

This function takes as input the stateCalc value, which determines where within VCS_SOLVE to fetch the mole numbers. It then updates this object with their values. This is essentially a gather routine.

Parameters

stateCalc State calc value either VCS_STATECALC_OLD or VCS_STATECALC_NEW. With any other value nothing is done.

Definition at line 382 of file vcs_VolPhase.cpp.

References VCS_STATECALC_NEW, and VCS_STATECALC_OLD.

Referenced by VCS_SOLVE::vcs_dfe().

◆ sendToVCS_ActCoeff()

void sendToVCS_ActCoeff	(	const int	stateCalc,
		double *const	AC
	)

Fill in an activity coefficients vector within a VCS_SOLVE object.

This routine will calculate the activity coefficients for the current phase, and fill in the corresponding entries in the VCS activity coefficients vector.

Parameters

AC	vector of activity coefficients for all of the species in all of the phases in a VCS problem. Only the entries for the current phase are filled in.

Definition at line 390 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_add_all_deleted(), VCS_SOLVE::vcs_dfe(), and VCS_SOLVE::vcs_phaseStabilityTest().

◆ setElectricPotential()

void setElectricPotential ( const double phi )

set the electric potential of the phase

Parameters

phi	electric potential (volts)

Definition at line 426 of file vcs_VolPhase.cpp.

◆ electricPotential()

double electricPotential ( ) const

Returns the electric field of the phase.

Units are potential

Definition at line 437 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_dfe().

◆ GStar_calc_one()

double GStar_calc_one ( size_t kspec ) const

Gibbs free energy calculation for standard state of one species.

Calculate the Gibbs free energies for the standard state of the kth species. The results are held internally within the object.

Parameters

kspec Species number (within the phase)

Returns: the Gibbs free energy for the standard state of the kth species.

Definition at line 187 of file vcs_VolPhase.cpp.

◆ G0_calc_one()

double G0_calc_one ( size_t kspec ) const

Gibbs free energy calculation at a temperature for the reference state of a species, return a value for one species.

Parameters

kspec species index

Returns: value of the Gibbs free energy

Definition at line 173 of file vcs_VolPhase.cpp.

◆ VolStar_calc_one()

double VolStar_calc_one ( size_t kspec ) const

Molar volume calculation for standard state of one species.

Calculate the molar volume for the standard states. The results are held internally within the object.

Parameters

kspec Species number (within the phase)

Returns: molar volume of the kspec species's standard state (m**3/kmol)

Definition at line 469 of file vcs_VolPhase.cpp.

◆ sendToVCS_VolPM()

double sendToVCS_VolPM ( double *const VolPM ) const

Fill in the partial molar volume vector for VCS.

This routine will calculate the partial molar volumes for the current phase (if needed), and fill in the corresponding entries in the VCS partial molar volumes vector.

Parameters

VolPM vector of partial molar volumes for all of the species in all of the phases in a VCS problem. Only the entries for the current phase are filled in.

Definition at line 403 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_VolTotal().

◆ sendToVCS_GStar()

void sendToVCS_GStar ( double *const gstar ) const

Fill in the partial molar volume vector for VCS.

This routine will calculate the partial molar volumes for the current phase (if needed), and fill in the corresponding entries in the VCS partial molar volumes vector.

Parameters

VolPM vector of partial molar volumes for all of the species in all of the phases in a VCS problem. Only the entries for the current phase are filled in.

Todo:: This function's documentation is incorrect.

Definition at line 415 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_evalSS_TP().

◆ setState_TP()

void setState_TP	(	const double	temperature_Kelvin,
		const double	pressure_PA
	)

Sets the temperature and pressure in this object and underlying ThermoPhase objects.

Parameters

temperature_Kelvin	(Kelvin)
pressure_PA	Pressure (MKS units - Pascal)

Definition at line 442 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_evalSS_TP(), VCS_SOLVE::vcs_prob_specifyFully(), and VCS_SOLVE::vcs_VolTotal().

◆ setState_T()

void setState_T ( const double temperature_Kelvin )

Sets the temperature in this object and underlying ThermoPhase objects.

Parameters

temperature_Kelvin (Kelvin)

Definition at line 458 of file vcs_VolPhase.cpp.

◆ setPtrThermoPhase()

void setPtrThermoPhase ( ThermoPhase * tp_ptr )

Set the pointer for Cantera's ThermoPhase parameter.

When we first initialize the ThermoPhase object, we read the state of the ThermoPhase into vcs_VolPhase object.

Parameters

tp_ptr Pointer to the ThermoPhase object corresponding to this phase.

Definition at line 579 of file vcs_VolPhase.cpp.

References plogf, and Phase::temperature().

◆ ptrThermoPhase()

const ThermoPhase * ptrThermoPhase ( ) const

Return a const ThermoPhase pointer corresponding to this phase.

Returns: pointer to the ThermoPhase.

Definition at line 614 of file vcs_VolPhase.cpp.

◆ totalMoles()

double totalMoles ( ) const

Return the total moles in the phase.

Definition at line 619 of file vcs_VolPhase.cpp.

Referenced by vcs_MultiPhaseEquil::reportCSV(), VCS_SOLVE::vcs_prob_specifyFully(), and VCS_SOLVE::vcs_report().

◆ molefraction()

double molefraction ( size_t kspec ) const

Returns the mole fraction of the kspec species.

Parameters

kspec Index of the species in the phase

Returns: Value of the mole fraction

Definition at line 624 of file vcs_VolPhase.cpp.

◆ setTotalMoles()

void setTotalMoles ( const double totalMols )

Sets the total moles in the phase.

We don't have to flag the internal state as changing here because we have just changed the total moles.

Parameters

totalMols Total moles in the phase (kmol)

Definition at line 644 of file vcs_VolPhase.cpp.

References AssertThrowMsg, VCS_PHASE_EXIST_ALWAYS, VCS_PHASE_EXIST_NO, and VCS_PHASE_EXIST_YES.

Referenced by VCS_SOLVE::vcs_delete_multiphase(), and VCS_SOLVE::vcs_tmoles().

◆ setMolesOutOfDate()

void setMolesOutOfDate ( int stateCalc = -1 )

Sets the mole flag within the object to out of date.

This will trigger the object to go get the current mole numbers when it needs it.

Definition at line 666 of file vcs_VolPhase.cpp.

◆ setMolesCurrent()

void setMolesCurrent ( int vcsStateStatus )

Sets the mole flag within the object to be current.

Definition at line 674 of file vcs_VolPhase.cpp.

◆ setMoleFractions()

void setMoleFractions ( const double *const xmol )

private

Set the mole fractions from a conventional mole fraction vector.

Parameters

xmol	Value of the mole fractions for the species in the phase. These are contiguous.

Definition at line 195 of file vcs_VolPhase.cpp.

◆ moleFractions()

const vector_fp & moleFractions ( ) const

Return a const reference to the mole fractions stored in the object.

Definition at line 223 of file vcs_VolPhase.cpp.

◆ setCreationMoleNumbers()

void setCreationMoleNumbers	(	const double *const	n_k,
		const std::vector< size_t > &	creationGlobalRxnNumbers
	)

Sets the creationMoleNum's within the phase object.

Parameters

F_k	Pointer to a vector of n_k's

Definition at line 629 of file vcs_VolPhase.cpp.

◆ creationMoleNumbers()

const vector_fp & creationMoleNumbers ( std::vector< size_t > & creationGlobalRxnNumbers ) const

Return a const reference to the creationMoleNumbers stored in the object.

Returns: a const reference to the vector of creationMoleNumbers

Definition at line 638 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_phaseStabilityTest(), and VCS_SOLVE::vcs_popPhaseRxnStepSizes().

◆ isIdealSoln()

bool isIdealSoln ( ) const

Returns whether the phase is an ideal solution phase.

Definition at line 680 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_CalcLnActCoeffJac().

◆ phiVarIndex()

size_t phiVarIndex ( ) const

Return the index of the species that represents the the voltage of the phase.

Definition at line 685 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_prob_specifyFully().

◆ speciesProperty()

vcs_SpeciesProperties * speciesProperty ( const size_t kindex )

Retrieve the kth Species structure for the species belonging to this phase.

The index into this vector is the species index within the phase.

Parameters

kindex kth species index.

Definition at line 699 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_prep().

◆ exists()

int exists ( ) const

int indicating whether the phase exists or not

returns the m_existence int for the phase

VCS_PHASE_EXIST_ZEROEDPHASE = -6: Set to not exist by fiat from a higher level. This is used in phase stability boundary calculations
VCS_PHASE_EXIST_NO = 0: Doesn't exist currently
VCS_PHASE_EXIST_MINORCONC = 1: Exists, but the concentration is so low that an alternate method is used to calculate the total phase concentrations.
VCS_PHASE_EXIST_YES = 2 : Does exist currently
VCS_PHASE_EXIST_ALWAYS = 3: Always exists because it contains inerts which can't exist in any other phase. Or, the phase exists always because it consists of a single species, which is identified with the voltage, i.e., it's an electron metal phase.

Definition at line 704 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_delete_species(), VCS_SOLVE::vcs_popPhaseID(), VCS_SOLVE::vcs_popPhasePossible(), VCS_SOLVE::vcs_popPhaseRxnStepSizes(), VCS_SOLVE::vcs_reinsert_deleted(), and VCS_SOLVE::vcs_RxnStepSizes().

◆ setExistence()

void setExistence ( const int existence )

Set the existence flag in the object.

Note the total moles of the phase must have been set appropriately before calling this routine.

Parameters

existence Phase existence flag

Note: try to eliminate this routine

Definition at line 709 of file vcs_VolPhase.cpp.

References VCS_PHASE_EXIST_NO, and VCS_PHASE_EXIST_ZEROEDPHASE.

Referenced by VCS_SOLVE::vcs_prob_specifyFully(), VCS_SOLVE::vcs_reinsert_deleted(), and VCS_SOLVE::vcs_SSPhase().

◆ spGlobalIndexVCS()

size_t spGlobalIndexVCS ( const size_t spIndex ) const

Return the Global VCS index of the kth species in the phase.

Parameters

spIndex local species index (0 to the number of species in the phase)

Returns: the VCS_SOLVE species index of the species. This changes as rearrangements are carried out.

Definition at line 729 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_deltag(), VCS_SOLVE::vcs_phaseStabilityTest(), VCS_SOLVE::vcs_popPhaseID(), VCS_SOLVE::vcs_popPhasePossible(), VCS_SOLVE::vcs_popPhaseRxnStepSizes(), and VCS_SOLVE::vcs_switch_pos().

◆ setSpGlobalIndexVCS()

void setSpGlobalIndexVCS	(	const size_t	spIndex,
		const size_t	spGlobalIndex
	)

set the Global VCS index of the kth species in the phase

Parameters

spIndex local species index (0 to the number of species in the phase)

Returns: the VCS_SOLVE species index of the that species This changes as rearrangements are carried out.

Definition at line 734 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::addOnePhaseSpecies(), and VCS_SOLVE::vcs_switch_pos().

◆ setTotalMolesInert()

void setTotalMolesInert ( const double tMolesInert )

Sets the total moles of inert in the phase.

Parameters

tMolesInert Value of the total kmols of inert species in the phase.

Definition at line 743 of file vcs_VolPhase.cpp.

References VCS_PHASE_EXIST_ALWAYS, VCS_PHASE_EXIST_NO, and VCS_PHASE_EXIST_YES.

◆ totalMolesInert()

double totalMolesInert ( ) const

Returns the value of the total kmol of inert in the phase.

Definition at line 768 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_prob_specifyFully().

◆ elemGlobalIndex()

size_t elemGlobalIndex ( const size_t e ) const

Returns the global index of the local element index for the phase.

Definition at line 773 of file vcs_VolPhase.cpp.

References AssertThrow.

Referenced by VCS_SOLVE::addOnePhaseSpecies(), and VCS_SOLVE::vcs_switch_elem_pos().

◆ setElemGlobalIndex()

void setElemGlobalIndex	(	const size_t	eLocal,
		const size_t	eGlobal
	)

sets a local phase element to a global index value

Parameters

eLocal	Local phase element index
eGlobal	Global phase element index

Definition at line 779 of file vcs_VolPhase.cpp.

References AssertThrow.

Referenced by VCS_SOLVE::addPhaseElements(), and VCS_SOLVE::vcs_switch_elem_pos().

◆ nElemConstraints()

size_t nElemConstraints ( ) const

Returns the number of element constraints.

Definition at line 786 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::addOnePhaseSpecies(), VCS_SOLVE::addPhaseElements(), and VCS_SOLVE::vcs_switch_elem_pos().

◆ elementName()

std::string elementName ( const size_t e ) const

Name of the element constraint with index e.

Parameters

e	Element index.

Definition at line 791 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::addPhaseElements().

◆ elementType()

int elementType ( const size_t e ) const

Type of the element constraint with index e.

Parameters

e	Element index.

Definition at line 924 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::addPhaseElements().

◆ transferElementsFM()

size_t transferElementsFM ( const ThermoPhase *const tPhase )

Transfer all of the element information from the ThermoPhase object to the vcs_VolPhase object.

Also decide whether we need a new charge neutrality element in the phase to enforce a charge neutrality constraint.

Parameters

tPhase Pointer to the ThermoPhase object

Definition at line 820 of file vcs_VolPhase.cpp.

References Phase::charge(), Cantera::chargeNeutralityElement(), Phase::elementName(), Phase::elementType(), Cantera::hasChargedSpecies(), Phase::id(), Phase::nAtoms(), Phase::nElements(), Cantera::npos, Phase::nSpecies(), VCS_ELEM_TYPE_CHARGENEUTRALITY, VCS_ELEM_TYPE_ELECTRONCHARGE, VCS_SPECIES_TYPE_INTERFACIALVOLTAGE, and VCS_SPECIES_TYPE_MOLNUM.

◆ getFormulaMatrix()

const Array2D & getFormulaMatrix ( ) const

Get a constant form of the Species Formula Matrix.

Returns a double** pointer such that fm[e][f] is the formula matrix entry for element e for species k

Definition at line 929 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::addOnePhaseSpecies().

◆ speciesUnknownType()

int speciesUnknownType ( const size_t k ) const

Returns the type of the species unknown.

Parameters

k	species index

Returns

the SpeciesUnknownType[k] = type of species

Normal -> VCS_SPECIES_TYPE_MOLUNK (unknown is the mole number in the phase)
metal electron -> VCS_SPECIES_INTERFACIALVOLTAGE (unknown is the interfacial voltage (volts))

Definition at line 934 of file vcs_VolPhase.cpp.

◆ nSpecies()

size_t nSpecies ( ) const

Return the number of species in the phase.

Definition at line 944 of file vcs_VolPhase.cpp.

Referenced by vcs_MultiPhaseEquil::equilibrate_TP(), VCS_SOLVE::vcs_deltag(), VCS_SOLVE::vcs_phaseStabilityTest(), VCS_SOLVE::vcs_popPhasePossible(), VCS_SOLVE::vcs_popPhaseRxnStepSizes(), VCS_SOLVE::vcs_prob_specifyFully(), and VCS_SOLVE::vcs_solve_TP().

◆ eos_name()

std::string eos_name ( ) const

Return the name corresponding to the equation of state.

Definition at line 949 of file vcs_VolPhase.cpp.

Referenced by VCS_SOLVE::vcs_prob_specifyFully().

◆ _updateActCoeff()

void _updateActCoeff ( ) const

private

Evaluate the activity coefficients at the current conditions.

We carry out a calculation whenever m_UpToDate_AC is false. Specifically whenever a phase goes zero, we do not carry out calculations on it.

Definition at line 157 of file vcs_VolPhase.cpp.

◆ _updateGStar()

void _updateGStar ( ) const

private

Gibbs free energy calculation for standard states.

Calculate the Gibbs free energies for the standard states The results are held internally within the object.

Definition at line 181 of file vcs_VolPhase.cpp.

◆ _updateG0()

void _updateG0 ( ) const

private

Gibbs free energy calculation at a temperature for the reference state of each species.

Definition at line 167 of file vcs_VolPhase.cpp.

◆ _updateVolStar()

void _updateVolStar ( ) const

private

Molar volume calculation for standard states.

Calculate the molar volume for the standard states. The results are held internally within the object. Units are in m**3/kmol.

Definition at line 463 of file vcs_VolPhase.cpp.

◆ _updateVolPM()

double _updateVolPM ( ) const

private

Calculate the partial molar volumes of all species and return the total volume.

Calculates these quantities internally and then stores them

Returns: total volume [m^3]

Definition at line 477 of file vcs_VolPhase.cpp.

References Cantera::GasConstant.

◆ _updateLnActCoeffJac()

void _updateLnActCoeffJac ( )

private

Evaluation of Activity Coefficient Jacobians.

This is the derivative of the ln of the activity coefficient with respect to mole number of jth species. (temp, pressure, and other mole numbers held constant)

We employ a finite difference derivative approach here. Because we have to change the mole numbers, this is not a const function, even though the paradigm would say that it should be.

Definition at line 498 of file vcs_VolPhase.cpp.

◆ _updateMoleFractionDependencies()

void _updateMoleFractionDependencies ( )

private

Updates the mole fraction dependencies.

Whenever the mole fractions change, this routine should be called.

Definition at line 212 of file vcs_VolPhase.cpp.

Member Data Documentation

◆ m_owningSolverObject

VCS_SOLVE* m_owningSolverObject

private

Backtrack value of VCS_SOLVE *.

Definition at line 530 of file vcs_VolPhase.h.

◆ VP_ID_

size_t VP_ID_

Original ID of the phase in the problem.

If a non-ideal phase splits into two due to a miscibility gap, these numbers will stay the same after the split.

Definition at line 538 of file vcs_VolPhase.h.

Referenced by VCS_SOLVE::vcs_prob_specifyFully().

◆ m_singleSpecies

bool m_singleSpecies

If true, this phase consists of a single species.

Definition at line 541 of file vcs_VolPhase.h.

Referenced by VCS_SOLVE::vcs_add_all_deleted(), VCS_SOLVE::vcs_CalcLnActCoeffJac(), VCS_SOLVE::vcs_deltag(), VCS_SOLVE::vcs_dfe(), VCS_SOLVE::vcs_popPhaseID(), VCS_SOLVE::vcs_popPhaseRxnStepSizes(), VCS_SOLVE::vcs_prob_specifyFully(), VCS_SOLVE::vcs_RxnStepSizes(), and VCS_SOLVE::vcs_SSPhase().

◆ m_gasPhase

bool m_gasPhase

If true, this phase is a gas-phase like phase.

A RTlog(p/1atm) term is added onto the chemical potential for inert species if this is true.

Definition at line 548 of file vcs_VolPhase.h.

Referenced by VCS_SOLVE::vcs_GibbsPhase(), VCS_SOLVE::vcs_prob_specifyFully(), and VCS_SOLVE::vcs_Total_Gibbs().

◆ m_eqnState

int m_eqnState

Type of the equation of state.

The known types are listed at the top of this file.

Definition at line 554 of file vcs_VolPhase.h.

◆ ChargeNeutralityElement

size_t ChargeNeutralityElement

This is the element number for the charge neutrality condition of the phase.

If it has one. If it does not have a charge neutrality constraint, then this value is equal to -1

Definition at line 562 of file vcs_VolPhase.h.

◆ p_activityConvention

int p_activityConvention

Convention for the activity formulation.

0 = molar based activities (default)
1 = Molality based activities, mu = mu_0 + ln a_molality. Standard state is based on unity molality

Definition at line 570 of file vcs_VolPhase.h.

◆ m_numElemConstraints

size_t m_numElemConstraints

private

Number of element constraints within the problem.

This is usually equal to the number of elements.

Definition at line 577 of file vcs_VolPhase.h.

◆ m_elementNames

std::vector<std::string> m_elementNames

private

vector of strings containing the element constraint names

Length = nElemConstraints

Definition at line 583 of file vcs_VolPhase.h.

◆ m_elementActive

vector_int m_elementActive

private

boolean indicating whether an element constraint is active for the current problem

Definition at line 587 of file vcs_VolPhase.h.

◆ m_elementType

vector_int m_elementType

private

Type of the element constraint.

m_elType[j] = type of the element:

0 VCS_ELEM_TYPE_ABSPOS Normal element that is positive or zero in all species.
1 VCS_ELEM_TYPE_ELECTRONCHARGE element dof that corresponds to the charge DOF.
2 VCS_ELEM_TYPE_OTHERCONSTRAINT Other constraint which may mean that a species has neg 0 or pos value of that constraint (other than charge)

Definition at line 600 of file vcs_VolPhase.h.

◆ m_formulaMatrix

Array2D m_formulaMatrix

private

Formula Matrix for the phase.

FormulaMatrix(kspec,j) = Formula Matrix for the species Number of elements, j, in the kspec species

Definition at line 607 of file vcs_VolPhase.h.

◆ m_speciesUnknownType

vector_int m_speciesUnknownType

private

Type of the species unknown.

SpeciesUnknownType[k] = type of species

Normal -> VCS_SPECIES_TYPE_MOLUNK. (unknown is the mole number in the phase)
metal electron -> VCS_SPECIES_INTERFACIALVOLTAGE. (unknown is the interfacial voltage (volts))

Definition at line 617 of file vcs_VolPhase.h.

◆ m_elemGlobalIndex

std::vector<size_t> m_elemGlobalIndex

private

Index of the element number in the global list of elements stored in VCS_SOLVE.

Definition at line 620 of file vcs_VolPhase.h.

◆ m_numSpecies

size_t m_numSpecies

private

Number of species in the phase.

Definition at line 623 of file vcs_VolPhase.h.

◆ PhaseName

std::string PhaseName

String name for the phase.

Definition at line 627 of file vcs_VolPhase.h.

Referenced by VCS_SOLVE::vcs_delete_multiphase(), VCS_SOLVE::vcs_popPhaseID(), VCS_SOLVE::vcs_popPhaseRxnStepSizes(), VCS_SOLVE::vcs_prob_specifyFully(), and VCS_SOLVE::vcs_report().

◆ m_totalMolesInert

double m_totalMolesInert

private

Total moles of inert in the phase.

Definition at line 631 of file vcs_VolPhase.h.

◆ m_isIdealSoln

bool m_isIdealSoln

private

Boolean indicating whether the phase is an ideal solution and therefore its molar-based activity coefficients are uniformly equal to one.

Definition at line 636 of file vcs_VolPhase.h.

◆ m_existence

int m_existence

private

Current state of existence:

VCS_PHASE_EXIST_ZEROEDPHASE = -6: Set to not exist by fiat from a higher level. This is used in phase stability boundary calculations
VCS_PHASE_EXIST_NO = 0: Doesn't exist currently
VCS_PHASE_EXIST_MINORCONC = 1: Exists, but the concentration is so low that an alternate method is used to calculate the total phase concentrations.
VCS_PHASE_EXIST_YES = 2 : Does exist currently
VCS_PHASE_EXIST_ALWAYS = 3: Always exists because it contains inerts which can't exist in any other phase. Or, the phase exists always because it consists of a single species, which is identified with the voltage, i.e., its an electron metal phase.

Definition at line 652 of file vcs_VolPhase.h.

◆ m_MFStartIndex

int m_MFStartIndex

private

This is always equal to zero. Am anticipating the case where the phase potential is species # 0, for multiphase phases. Right now we have the phase potential equal to 0 for single species phases, where we set by hand the mole fraction of species 0 to one.

Definition at line 662 of file vcs_VolPhase.h.

◆ IndSpecies

std::vector<size_t> IndSpecies

private

Index into the species vectors.

Maps the phase species number into the global species number. Note, as part of the vcs algorithm, the order of the species vector is changed during the algorithm

Definition at line 670 of file vcs_VolPhase.h.

◆ ListSpeciesPtr

std::vector<vcs_SpeciesProperties*> ListSpeciesPtr

private

Vector of Species structures for the species belonging to this phase.

The index into this vector is the species index within the phase.

Definition at line 676 of file vcs_VolPhase.h.

◆ TP_ptr

ThermoPhase* TP_ptr

private

If we are using Cantera, this is the pointer to the ThermoPhase object.

If not, this is null.

Definition at line 682 of file vcs_VolPhase.h.

◆ v_totalMoles

double v_totalMoles

private

Total mols in the phase. units are kmol.

Definition at line 685 of file vcs_VolPhase.h.

◆ Xmol_

vector_fp Xmol_

private

Vector of the current mole fractions for species in the phase.

Definition at line 688 of file vcs_VolPhase.h.

◆ creationMoleNumbers_

vector_fp creationMoleNumbers_

private

Vector of current creationMoleNumbers_.

These are the actual unknowns in the phase stability problem

Definition at line 694 of file vcs_VolPhase.h.

◆ creationGlobalRxnNumbers_

std::vector<size_t> creationGlobalRxnNumbers_

private

Vector of creation global reaction numbers for the phase stability problem.

The phase stability problem requires a global reaction number for each species in the phase. Usually this is the krxn = kglob - M for species in the phase that are not components. For component species, the choice of the reaction is one which maximizes the chance that the phase pops into (or remains in) existence.

The index here is the local phase species index. the value of the variable is the global vcs reaction number. Note, that the global reaction number will go out of order when the species positions are swapped. So, this number has to be recalculated.

Length = number of species in phase

Definition at line 711 of file vcs_VolPhase.h.

◆ m_phiVarIndex

size_t m_phiVarIndex

private

If the potential is a solution variable in VCS, it acts as a species.

This is the species index in the phase for the potential

Definition at line 715 of file vcs_VolPhase.h.

◆ m_totalVol

double m_totalVol

mutableprivate

Total Volume of the phase. Units are m**3.

Definition at line 718 of file vcs_VolPhase.h.

◆ SS0ChemicalPotential

vector_fp SS0ChemicalPotential

mutableprivate

Vector of calculated SS0 chemical potentials for the current Temperature.

Note, This is the chemical potential derived strictly from the polynomial in temperature. Pressure effects have to be added in to get to the standard state. Units are J/kmol.

Definition at line 727 of file vcs_VolPhase.h.

◆ StarChemicalPotential

vector_fp StarChemicalPotential

mutableprivate

Vector of calculated Star chemical potentials for the current Temperature and pressure.

Note, This is the chemical potential at unit activity. Thus, we can call it the standard state chemical potential as well. Units are J/kmol.

Definition at line 735 of file vcs_VolPhase.h.

◆ StarMolarVol

vector_fp StarMolarVol

mutableprivate

Vector of the Star molar Volumes of the species. units m3 / kmol.

Definition at line 738 of file vcs_VolPhase.h.

◆ PartialMolarVol

vector_fp PartialMolarVol

mutableprivate

Vector of the Partial molar Volumes of the species. units m3 / kmol.

Definition at line 741 of file vcs_VolPhase.h.

◆ ActCoeff

vector_fp ActCoeff

mutableprivate

Vector of calculated activity coefficients for the current state.

Whether or not this vector is current is determined by the bool m_UpToDate_AC.

Definition at line 748 of file vcs_VolPhase.h.

◆ np_dLnActCoeffdMolNumber

Array2D np_dLnActCoeffdMolNumber

mutableprivate

Vector of the derivatives of the ln activity coefficient wrt to the current mole number multiplied by the current phase moles.

np_dLnActCoeffdMolNumber(k,j);

j = id of the species mole number
k = id of the species activity coefficient

Definition at line 757 of file vcs_VolPhase.h.

◆ m_vcsStateStatus

int m_vcsStateStatus

private

Status.

valid values are

VCS_STATECALC_OLD
VCS_STATECALC_NEW
VCS_STATECALC_TMP

Definition at line 766 of file vcs_VolPhase.h.

◆ m_phi

double m_phi

private

Value of the potential for the phase (Volts)

Definition at line 769 of file vcs_VolPhase.h.

◆ m_UpToDate

bool m_UpToDate

private

Boolean indicating whether the object has an up-to-date mole number vector and potential with respect to the current vcs state calc status.

Definition at line 773 of file vcs_VolPhase.h.

◆ m_UpToDate_AC

bool m_UpToDate_AC

mutableprivate

Boolean indicating whether activity coefficients are up to date.

Activity coefficients and volume calculations are lagged. They are only called when they are needed (and when the state has changed so that they need to be recalculated).

Definition at line 781 of file vcs_VolPhase.h.

◆ m_UpToDate_VolStar

bool m_UpToDate_VolStar

mutableprivate

Boolean indicating whether Star volumes are up to date.

Activity coefficients and volume calculations are lagged. They are only called when they are needed (and when the state has changed so that they need to be recalculated). Star volumes are sensitive to temperature and pressure

Definition at line 790 of file vcs_VolPhase.h.

◆ m_UpToDate_VolPM

bool m_UpToDate_VolPM

mutableprivate

Boolean indicating whether partial molar volumes are up to date.

Activity coefficients and volume calculations are lagged. They are only called when they are needed (and when the state has changed so that they need to be recalculated). partial molar volumes are sensitive to everything

Definition at line 799 of file vcs_VolPhase.h.

◆ m_UpToDate_GStar

bool m_UpToDate_GStar

mutableprivate

Boolean indicating whether GStar is up to date.

GStar is sensitive to the temperature and the pressure, only

Definition at line 805 of file vcs_VolPhase.h.

◆ m_UpToDate_G0

bool m_UpToDate_G0

mutableprivate

Boolean indicating whether G0 is up to date.

G0 is sensitive to the temperature and the pressure, only

Definition at line 811 of file vcs_VolPhase.h.

◆ Temp_

double Temp_

private

Current value of the temperature for this object, and underlying objects.

Definition at line 814 of file vcs_VolPhase.h.

◆ Pres_

double Pres_

private

Current value of the pressure for this object, and underlying objects.

Definition at line 817 of file vcs_VolPhase.h.

The documentation for this class was generated from the following files:

Public Member Functions

Public Attributes

Private Member Functions

Private Attributes

Detailed Description

Member Function Documentation

◆ resize()

◆ setMoleFractionsState()

◆ setMolesFromVCS()

◆ setMolesFromVCSCheck()

◆ updateFromVCS_MoleNumbers()

◆ sendToVCS_ActCoeff()

◆ setElectricPotential()

◆ electricPotential()

◆ GStar_calc_one()

◆ G0_calc_one()

◆ VolStar_calc_one()

◆ sendToVCS_VolPM()

◆ sendToVCS_GStar()

◆ setState_TP()

◆ setState_T()

◆ setPtrThermoPhase()

◆ ptrThermoPhase()

◆ totalMoles()

◆ molefraction()

◆ setTotalMoles()

◆ setMolesOutOfDate()

◆ setMolesCurrent()

◆ setMoleFractions()

◆ moleFractions()

◆ setCreationMoleNumbers()

◆ creationMoleNumbers()

◆ isIdealSoln()

◆ phiVarIndex()

◆ speciesProperty()

◆ exists()

◆ setExistence()

◆ spGlobalIndexVCS()

◆ setSpGlobalIndexVCS()

◆ setTotalMolesInert()

◆ totalMolesInert()

◆ elemGlobalIndex()

◆ setElemGlobalIndex()

◆ nElemConstraints()

◆ elementName()

◆ elementType()

◆ transferElementsFM()

◆ getFormulaMatrix()

◆ speciesUnknownType()

◆ nSpecies()

◆ eos_name()

◆ _updateActCoeff()

◆ _updateGStar()

◆ _updateG0()

◆ _updateVolStar()

◆ _updateVolPM()

◆ _updateLnActCoeffJac()

◆ _updateMoleFractionDependencies()

Member Data Documentation

◆ m_owningSolverObject

◆ VP_ID_

◆ m_singleSpecies

◆ m_gasPhase

◆ m_eqnState

◆ ChargeNeutralityElement

◆ p_activityConvention

◆ m_numElemConstraints

◆ m_elementNames

◆ m_elementActive

◆ m_elementType

◆ m_formulaMatrix

◆ m_speciesUnknownType

◆ m_elemGlobalIndex

◆ m_numSpecies

◆ PhaseName

◆ m_totalMolesInert

◆ m_isIdealSoln

◆ m_existence

◆ m_MFStartIndex

◆ IndSpecies