Generic matrix. More...

#include <GeneralMatrix.h>

Inheritance diagram for GeneralMatrix:

Public Member Functions
	GeneralMatrix (int matType)
	Base Constructor. More...

	GeneralMatrix (const GeneralMatrix &right)
	Copy Constructor. More...

GeneralMatrix &	operator= (const GeneralMatrix &right)
	Assignment operator. More...

virtual	~GeneralMatrix ()
	Destructor. Does nothing. More...

virtual GeneralMatrix *	duplMyselfAsGeneralMatrix () const =0
	Duplicator member function. More...

virtual void	zero ()=0
	Zero the matrix elements. More...

virtual void	mult (const doublereal b, doublereal prod) const =0
	Multiply A*b and write result to prod. More...

virtual void	leftMult (const doublereal const b, doublereal const prod) const =0
	Multiply b*A and write result to prod. More...

virtual int	factor ()=0
	Factors the A matrix, overwriting A. More...

virtual int	factorQR ()
	Factors the A matrix using the QR algorithm, overwriting A. More...

virtual doublereal	rcondQR ()
	Returns an estimate of the inverse of the condition number for the matrix. More...

virtual doublereal	rcond (doublereal a1norm)=0
	Returns an estimate of the inverse of the condition number for the matrix. More...

virtual void	useFactorAlgorithm (int fAlgorithm)
	Change the way the matrix is factored. More...

virtual int	factorAlgorithm () const =0
	Return the factor algorithm used. More...

virtual doublereal	oneNorm () const =0
	Calculate the one norm of the matrix. More...

virtual size_t	nRows () const =0
	Return the number of rows in the matrix. More...

virtual size_t	nRowsAndStruct (size_t *const iStruct=0) const =0
	Return the size and structure of the matrix. More...

virtual void	clearFactorFlag ()
	clear the factored flag More...

virtual int	solve (doublereal *b, size_t nrhs=1, size_t ldb=0)=0
	Solves the Ax = b system returning x in the b spot. More...

virtual bool	factored () const
	true if the current factorization is up to date with the matrix More...

virtual doublereal *	ptrColumn (size_t j)=0
	Return a pointer to the top of column j, columns are assumed to be contiguous in memory. More...

virtual doublereal &	operator() (size_t i, size_t j)=0
	Index into the (i,j) element. More...

virtual doublereal	operator() (size_t i, size_t j) const =0
	Constant Index into the (i,j) element. More...

virtual void	copyData (const GeneralMatrix &y)=0
	Copy the data from one array into another without doing any checking. More...

virtual vector_fp::iterator	begin ()=0
	Return an iterator pointing to the first element. More...

virtual vector_fp::const_iterator	begin () const =0
	Return a const iterator pointing to the first element. More...

virtual doublereal const	colPts ()=0
	Return a vector of const pointers to the columns. More...

virtual size_t	checkRows (doublereal &valueSmall) const =0
	Check to see if we have any zero rows in the Jacobian. More...

virtual size_t	checkColumns (doublereal &valueSmall) const =0
	Check to see if we have any zero columns in the Jacobian. More...

Public Attributes
int	matrixType_
	Matrix type. More...

Protected Attributes
int	m_factored
	Indicates whether the matrix is factored. More...

Detailed Description

Generic matrix.

Definition at line 24 of file GeneralMatrix.h.

Constructor & Destructor Documentation

GeneralMatrix ( int matType )

Base Constructor.

Parameters

matType Matrix type 0 full 1 banded

Definition at line 18 of file GeneralMatrix.cpp.

GeneralMatrix ( const GeneralMatrix & right )

Copy Constructor.

Definition at line 24 of file GeneralMatrix.cpp.

virtual ~GeneralMatrix ( )

inlinevirtual

Destructor. Does nothing.

Definition at line 42 of file GeneralMatrix.h.

Member Function Documentation

GeneralMatrix & operator= ( const GeneralMatrix & right )

Assignment operator.

Definition at line 30 of file GeneralMatrix.cpp.

References GeneralMatrix::m_factored, and GeneralMatrix::matrixType_.

Referenced by SquareMatrix::operator=(), and BandMatrix::operator=().

virtual GeneralMatrix* duplMyselfAsGeneralMatrix ( ) const

pure virtual

Duplicator member function.

This function will duplicate the matrix given a generic GeneralMatrix

Returns: Returns a pointer to the malloced object

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve(), and NonlinearSolver::solve_nonlinear_problem().

virtual void zero ( )

pure virtual

Zero the matrix elements.

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual void mult	(	const doublereal *	b,
		doublereal *	prod
	)		const

pure virtual

Multiply A*b and write result to prod.

Parameters

b	Vector to do the rh multiplication
prod	OUTPUT vector to receive the result

Implemented in BandMatrix.

virtual void leftMult	(	const doublereal *const	b,
		doublereal *const	prod
	)		const

pure virtual

Multiply b*A and write result to prod.

Parameters

b	Vector to do the lh multiplication
prod	OUTPUT vector to receive the result

Implemented in BandMatrix, and SquareMatrix.

virtual int factor ( )

pure virtual

Factors the A matrix, overwriting A.

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual int factorQR ( )

inlinevirtual

Factors the A matrix using the QR algorithm, overwriting A.

we set m_factored to 2 to indicate the matrix is now QR factored

Returns: Returns the info variable from LAPACK

Reimplemented in SquareMatrix.

Definition at line 81 of file GeneralMatrix.h.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual doublereal rcondQR ( )

inlinevirtual

Returns an estimate of the inverse of the condition number for the matrix.

The matrix must have been previously factored using the QR algorithm

Returns: returns the inverse of the condition number

Reimplemented in SquareMatrix.

Definition at line 91 of file GeneralMatrix.h.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual doublereal rcond ( doublereal a1norm )

pure virtual

Returns an estimate of the inverse of the condition number for the matrix.

The matrix must have been previously factored using the LU algorithm

Parameters

a1norm Norm of the matrix

Returns: returns the inverse of the condition number

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual void useFactorAlgorithm ( int fAlgorithm )

inlinevirtual

Change the way the matrix is factored.

Parameters

fAlgorithm integer 0 LU factorization 1 QR factorization

Reimplemented in BandMatrix, and SquareMatrix.

Definition at line 111 of file GeneralMatrix.h.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual int factorAlgorithm ( ) const

pure virtual

Return the factor algorithm used.

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual doublereal oneNorm ( ) const

pure virtual

Calculate the one norm of the matrix.

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve().

virtual size_t nRows ( ) const

pure virtual

Return the number of rows in the matrix.

Implemented in BandMatrix, and SquareMatrix.

virtual size_t nRowsAndStruct ( size_t *const iStruct = 0 ) const

pure virtual

Return the size and structure of the matrix.

Parameters

iStruct OUTPUT Pointer to a vector of ints that describe the structure of the matrix.

Returns: returns the number of rows and columns in the matrix.

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::beuler_jac(), and NonlinearSolver::scaleMatrix().

virtual void clearFactorFlag ( )

inlinevirtual

clear the factored flag

Definition at line 133 of file GeneralMatrix.h.

References GeneralMatrix::m_factored.

Referenced by BEulerInt::beuler_jac(), and NonlinearSolver::beuler_jac().

virtual int solve	(	doublereal *	b,
		size_t	nrhs = `1`,
		size_t	ldb = `0`
	)

pure virtual

Solves the Ax = b system returning x in the b spot.

Parameters

b	Vector for the RHS of the equation system
nrhs	Number of right-hand sides to solve, default 1
ldb	Leading dimension of the right-hand side array. Defaults to nRows()

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::doAffineNewtonSolve(), NonlinearSolver::doNewtonSolve(), and BEulerInt::doNewtonSolve().

virtual bool factored ( ) const

inlinevirtual

true if the current factorization is up to date with the matrix

Definition at line 147 of file GeneralMatrix.h.

References GeneralMatrix::m_factored.

Referenced by NonlinearSolver::calcSolnToResNormVector(), NonlinearSolver::doAffineNewtonSolve(), BEulerInt::doNewtonSolve(), and NonlinearSolver::scaleMatrix().

virtual doublereal* ptrColumn ( size_t j )

pure virtual

Return a pointer to the top of column j, columns are assumed to be contiguous in memory.

Parameters

j	Value of the column

Returns: Returns a pointer to the top of the column

Implemented in BandMatrix, and SquareMatrix.

Referenced by BEulerInt::beuler_jac(), NonlinearSolver::beuler_jac(), BandMatrix::copyData(), and NonlinearSolver::scaleMatrix().

virtual doublereal& operator()	(	size_t	i,
		size_t	j
	)

pure virtual

Index into the (i,j) element.

Parameters

i	row
j	column

Returns a changeable reference to the matrix entry

Implemented in SquareMatrix, and BandMatrix.

virtual doublereal operator()	(	size_t	i,
		size_t	j
	)		const

pure virtual

Constant Index into the (i,j) element.

Parameters

i	row
j	column

Returns an unchangeable reference to the matrix entry

Implemented in SquareMatrix, and BandMatrix.

virtual void copyData ( const GeneralMatrix & y )

pure virtual

Copy the data from one array into another without doing any checking.

This differs from the assignment operator as no resizing is done and memcpy() is used.

Parameters

y	Array to be copied

Deprecated:: To be removed after Cantera 2.2.

Implemented in BandMatrix, and SquareMatrix.

virtual vector_fp::iterator begin ( )

pure virtual

Return an iterator pointing to the first element.

We might drop this later

Implemented in BandMatrix, and SquareMatrix.

Referenced by BEulerInt::computeResidWts(), NonlinearSolver::doAffineNewtonSolve(), BEulerInt::doNewtonSolve(), and NonlinearSolver::scaleMatrix().

virtual vector_fp::const_iterator begin ( ) const

pure virtual

Return a const iterator pointing to the first element.

We might drop this later

Implemented in BandMatrix, and SquareMatrix.

virtual doublereal* const* colPts ( )

pure virtual

Return a vector of const pointers to the columns.

Note the value of the pointers are protected by their being const. However, the value of the matrix is open to being changed.

Returns: returns a vector of pointers to the top of the columns of the matrices.

Implemented in BandMatrix.

Referenced by ResidJacEval::evalJacobian().

virtual size_t checkRows ( doublereal & valueSmall ) const

pure virtual

Check to see if we have any zero rows in the Jacobian.

This utility routine checks to see if any rows are zero. The smallest row is returned along with the largest coefficient in that row

Parameters

valueSmall OUTPUT value of the largest coefficient in the smallest row

Returns: index of the row that is most nearly zero

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::beuler_jac().

virtual size_t checkColumns ( doublereal & valueSmall ) const

pure virtual

Check to see if we have any zero columns in the Jacobian.

This utility routine checks to see if any columns are zero. The smallest column is returned along with the largest coefficient in that column

Parameters

valueSmall OUTPUT value of the largest coefficient in the smallest column

Returns: index of the column that is most nearly zero

Implemented in BandMatrix, and SquareMatrix.

Referenced by NonlinearSolver::beuler_jac().

Member Data Documentation

int matrixType_

Matrix type.

0 Square 1 Banded

Definition at line 234 of file GeneralMatrix.h.

Referenced by NonlinearSolver::beuler_jac(), NonlinearSolver::doAffineNewtonSolve(), GeneralMatrix::operator=(), and NonlinearSolver::scaleMatrix().

int m_factored

protected

Indicates whether the matrix is factored.

0 for unfactored; Non-zero values indicate a particular factorization (LU=1, QR=2).

Definition at line 239 of file GeneralMatrix.h.

Referenced by BandMatrix::begin(), BandMatrix::bfill(), GeneralMatrix::clearFactorFlag(), BandMatrix::copyData(), BandMatrix::end(), SquareMatrix::factor(), BandMatrix::factor(), GeneralMatrix::factored(), SquareMatrix::factorQR(), GeneralMatrix::operator=(), SquareMatrix::rcond(), BandMatrix::rcond(), SquareMatrix::rcondQR(), BandMatrix::resize(), SquareMatrix::setFactorFlag(), SquareMatrix::solve(), BandMatrix::solve(), SquareMatrix::solveQR(), BandMatrix::value(), and BandMatrix::zero().

The documentation for this class was generated from the following files:

Public Member Functions

Public Attributes

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation