Cantera  2.1.2
Public Member Functions | Protected Member Functions | Protected Attributes | Private Member Functions | List of all members
MolalityVPSSTP Class Reference

#include <MolalityVPSSTP.h>

Inheritance diagram for MolalityVPSSTP:
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Collaboration diagram for MolalityVPSSTP:
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Public Member Functions

 MolalityVPSSTP ()
 Default Constructor. More...
 
 MolalityVPSSTP (const MolalityVPSSTP &b)
 Copy constructor. More...
 
MolalityVPSSTPoperator= (const MolalityVPSSTP &b)
 Assignment operator. More...
 
virtual ThermoPhaseduplMyselfAsThermoPhase () const
 Duplication routine for objects which inherit from ThermoPhase. More...
 
virtual void setStateFromXML (const XML_Node &state)
 Set equation of state parameter values from XML entries. More...
 
void setState_TPM (doublereal t, doublereal p, const doublereal *const molalities)
 Set the temperature (K), pressure (Pa), and molalities (gmol kg-1) of the solutes. More...
 
void setState_TPM (doublereal t, doublereal p, compositionMap &m)
 Set the temperature (K), pressure (Pa), and molalities. More...
 
void setState_TPM (doublereal t, doublereal p, const std::string &m)
 Set the temperature (K), pressure (Pa), and molalities. More...
 
virtual void getdlnActCoeffdlnN (const size_t ld, doublereal *const dlnActCoeffdlnN)
 Get the array of derivatives of the log activity coefficients with respect to the log of the species mole numbers. More...
 
virtual std::string report (bool show_thermo=true) const
 returns a summary of the state of the phase as a string More...
 
Utilities
virtual int eosType () const
 Equation of state type flag. More...
 
void setpHScale (const int pHscaleType)
 Set the pH scale, which determines the scale for single-ion activity coefficients. More...
 
int pHScale () const
 Reports the pH scale, which determines the scale for single-ion activity coefficients. More...
 
Utilities for Solvent ID and Molality
void setSolvent (size_t k)
 This routine sets the index number of the solvent for the phase. More...
 
size_t solventIndex () const
 Returns the solvent index. More...
 
void setMoleFSolventMin (doublereal xmolSolventMIN)
 Sets the minimum mole fraction in the molality formulation. More...
 
doublereal moleFSolventMin () const
 Returns the minimum mole fraction in the molality formulation. More...
 
void calcMolalities () const
 Calculates the molality of all species and stores the result internally. More...
 
void getMolalities (doublereal *const molal) const
 This function will return the molalities of the species. More...
 
void setMolalities (const doublereal *const molal)
 Set the molalities of the solutes in a phase. More...
 
void setMolalitiesByName (compositionMap &xMap)
 Set the molalities of a phase. More...
 
void setMolalitiesByName (const std::string &name)
 Set the molalities of a phase. More...
 
Activities, Standard States, and Activity Concentrations

The activity \(a_k\) of a species in solution is related to the chemical potential by

\[ \mu_k = \mu_k^0(T) + \hat R T \log a_k. \]

The quantity \(\mu_k^0(T,P)\) is the chemical potential at unit activity, which depends only on temperature and pressure.

int activityConvention () const
 This method returns the activity convention. More...
 
virtual void getActivityConcentrations (doublereal *c) const
 This method returns an array of generalized concentrations \( C_k\) that are defined such that \( a_k = C_k / C^0_k, \) where \( C^0_k \) is a standard concentration defined below. More...
 
virtual doublereal standardConcentration (size_t k=0) const
 The standard concentration \( C^0_k \) used to normalize the generalized concentration. More...
 
virtual doublereal logStandardConc (size_t k=0) const
 Returns the natural logarithm of the standard concentration of the kth species. More...
 
virtual void getUnitsStandardConc (double *uA, int k=0, int sizeUA=6) const
 Returns the units of the standard and generalized concentrations Note they have the same units, as their ratio is defined to be equal to the activity of the kth species in the solution, which is unitless. More...
 
virtual void getActivities (doublereal *ac) const
 Get the array of non-dimensional activities (molality based for this class and classes that derive from it) at the current solution temperature, pressure, and solution concentration. More...
 
void getActivityCoefficients (doublereal *ac) const
 Get the array of non-dimensional activity coefficients at the current solution temperature, pressure, and solution concentration. More...
 
virtual void getMolalityActivityCoefficients (doublereal *acMolality) const
 Get the array of non-dimensional molality based activity coefficients at the current solution temperature, pressure, and solution concentration. More...
 
virtual double osmoticCoefficient () const
 Calculate the osmotic coefficient. More...
 
Partial Molar Properties of the Solution
void getElectrochemPotentials (doublereal *mu) const
 Get the species electrochemical potentials. More...
 
Chemical Equilibrium

Routines that implement the Chemical equilibrium capability for a single phase, based on the element-potential method.

virtual void setToEquilState (const doublereal *lambda_RT)
 This method is used by the ChemEquil element-potential based equilibrium solver. More...
 
Initialization

The following methods are used in the process of constructing the phase and setting its parameters from a specification in an input file.

They are not normally used in application programs. To see how they are used, see files importCTML.cpp and ThermoFactory.cpp.

virtual void initThermo ()
 Initialize the ThermoPhase object after all species have been set up. More...
 
void initThermoXML (XML_Node &phaseNode, const std::string &id)
 Import and initialize a ThermoPhase object. More...
 
- Public Member Functions inherited from VPStandardStateTP
 VPStandardStateTP ()
 Constructor. More...
 
 VPStandardStateTP (const VPStandardStateTP &b)
 Copy Constructor. More...
 
VPStandardStateTPoperator= (const VPStandardStateTP &b)
 Assignment operator. More...
 
virtual ~VPStandardStateTP ()
 Destructor. More...
 
virtual int standardStateConvention () const
 This method returns the convention used in specification of the standard state, of which there are currently two, temperature based, and variable pressure based. More...
 
virtual void getdlnActCoeffdlnN_diag (doublereal *dlnActCoeffdlnN_diag) const
 Get the array of log concentration-like derivatives of the log activity coefficients. More...
 
void getChemPotentials_RT (doublereal *mu) const
 Get the array of non-dimensional species chemical potentials. More...
 
virtual void getStandardChemPotentials (doublereal *mu) const
 Get the array of chemical potentials at unit activity. More...
 
virtual void getEnthalpy_RT (doublereal *hrt) const
 Get the nondimensional Enthalpy functions for the species at their standard states at the current T and P of the solution. More...
 
virtual void getEntropy_R (doublereal *sr) const
 Get the array of nondimensional Enthalpy functions for the standard state species at the current T and P of the solution. More...
 
virtual void getGibbs_RT (doublereal *grt) const
 Get the nondimensional Gibbs functions for the species at their standard states of solution at the current T and P of the solution. More...
 
void getPureGibbs (doublereal *gpure) const
 Get the standard state Gibbs functions for each species at the current T and P. More...
 
virtual void getIntEnergy_RT (doublereal *urt) const
 Returns the vector of nondimensional internal Energies of the standard state at the current temperature and pressure of the solution for each species. More...
 
virtual void getCp_R (doublereal *cpr) const
 Get the nondimensional Heat Capacities at constant pressure for the standard state of the species at the current T and P. More...
 
virtual void getStandardVolumes (doublereal *vol) const
 Get the molar volumes of each species in their standard states at the current T and P of the solution. More...
 
virtual const vector_fpgetStandardVolumes () const
 
virtual void setTemperature (const doublereal temp)
 Set the temperature of the phase. More...
 
virtual void setPressure (doublereal p)
 Set the internally stored pressure (Pa) at constant temperature and composition. More...
 
virtual void setState_TP (doublereal T, doublereal pres)
 Set the temperature and pressure at the same time. More...
 
doublereal pressure () const
 Returns the current pressure of the phase. More...
 
virtual void updateStandardStateThermo () const
 Updates the standard state thermodynamic functions at the current T and P of the solution. More...
 
virtual void getEnthalpy_RT_ref (doublereal *hrt) const
 Returns the vector of nondimensional enthalpies of the reference state at the current temperature of the solution and the reference pressure for the species. More...
 
virtual void getGibbs_RT_ref (doublereal *grt) const
 Returns the vector of nondimensional Gibbs free energies of the reference state at the current temperature of the solution and the reference pressure for the species. More...
 
virtual void getGibbs_ref (doublereal *g) const
 
virtual void getEntropy_R_ref (doublereal *er) const
 
virtual void getCp_R_ref (doublereal *cprt) const
 
virtual void getStandardVolumes_ref (doublereal *vol) const
 Get the molar volumes of the species reference states at the current T and P_ref of the solution. More...
 
virtual void setParametersFromXML (const XML_Node &eosdata)
 Set equation of state parameter values from XML entries. More...
 
void setVPSSMgr (VPSSMgr *vp_ptr)
 set the VPSS Mgr More...
 
VPSSMgrprovideVPSSMgr ()
 Return a pointer to the VPSSMgr for this phase. More...
 
void createInstallPDSS (size_t k, const XML_Node &s, const XML_Node *phaseNode_ptr)
 
PDSSprovidePDSS (size_t k)
 
const PDSSprovidePDSS (size_t k) const
 
- Public Member Functions inherited from ThermoPhase
 ThermoPhase ()
 Constructor. More...
 
virtual ~ThermoPhase ()
 Destructor. Deletes the species thermo manager. More...
 
 ThermoPhase (const ThermoPhase &right)
 Copy Constructor for the ThermoPhase object. More...
 
ThermoPhaseoperator= (const ThermoPhase &right)
 Assignment operator. More...
 
doublereal _RT () const
 Return the Gas Constant multiplied by the current temperature. More...
 
virtual doublereal refPressure () const
 Returns the reference pressure in Pa. More...
 
virtual doublereal minTemp (size_t k=npos) const
 Minimum temperature for which the thermodynamic data for the species or phase are valid. More...
 
doublereal Hf298SS (const int k) const
 Report the 298 K Heat of Formation of the standard state of one species (J kmol-1) More...
 
virtual void modifyOneHf298SS (const int k, const doublereal Hf298New)
 Modify the value of the 298 K Heat of Formation of one species in the phase (J kmol-1) More...
 
virtual doublereal maxTemp (size_t k=npos) const
 Maximum temperature for which the thermodynamic data for the species are valid. More...
 
bool chargeNeutralityNecessary () const
 Returns the chargeNeutralityNecessity boolean. More...
 
virtual doublereal enthalpy_mole () const
 Molar enthalpy. Units: J/kmol. More...
 
virtual doublereal intEnergy_mole () const
 Molar internal energy. Units: J/kmol. More...
 
virtual doublereal entropy_mole () const
 Molar entropy. Units: J/kmol/K. More...
 
virtual doublereal gibbs_mole () const
 Molar Gibbs function. Units: J/kmol. More...
 
virtual doublereal cp_mole () const
 Molar heat capacity at constant pressure. Units: J/kmol/K. More...
 
virtual doublereal cv_mole () const
 Molar heat capacity at constant volume. Units: J/kmol/K. More...
 
virtual doublereal cv_vib (int, double) const
 
virtual doublereal isothermalCompressibility () const
 Returns the isothermal compressibility. Units: 1/Pa. More...
 
virtual doublereal thermalExpansionCoeff () const
 Return the volumetric thermal expansion coefficient. Units: 1/K. More...
 
void setElectricPotential (doublereal v)
 Set the electric potential of this phase (V). More...
 
doublereal electricPotential () const
 Returns the electric potential of this phase (V). More...
 
virtual void getLnActivityCoefficients (doublereal *lnac) const
 Get the array of non-dimensional molar-based ln activity coefficients at the current solution temperature, pressure, and solution concentration. More...
 
virtual void getChemPotentials (doublereal *mu) const
 Get the species chemical potentials. Units: J/kmol. More...
 
void getElectrochemPotentials (doublereal *mu) const
 Get the species electrochemical potentials. More...
 
virtual void getPartialMolarEnthalpies (doublereal *hbar) const
 Returns an array of partial molar enthalpies for the species in the mixture. More...
 
virtual void getPartialMolarEntropies (doublereal *sbar) const
 Returns an array of partial molar entropies of the species in the solution. More...
 
virtual void getPartialMolarIntEnergies (doublereal *ubar) const
 Return an array of partial molar internal energies for the species in the mixture. More...
 
virtual void getPartialMolarCp (doublereal *cpbar) const
 Return an array of partial molar heat capacities for the species in the mixture. More...
 
virtual void getPartialMolarVolumes (doublereal *vbar) const
 Return an array of partial molar volumes for the species in the mixture. More...
 
virtual void getdPartialMolarVolumes_dT (doublereal *d_vbar_dT) const
 Return an array of derivatives of partial molar volumes wrt temperature for the species in the mixture. More...
 
virtual void getdPartialMolarVolumes_dP (doublereal *d_vbar_dP) const
 Return an array of derivatives of partial molar volumes wrt pressure for the species in the mixture. More...
 
virtual void getdStandardVolumes_dT (doublereal *d_vol_dT) const
 Get the derivative of the molar volumes of the species standard states wrt temperature at the current T and P of the solution. More...
 
virtual void getdStandardVolumes_dP (doublereal *d_vol_dP) const
 Get the derivative molar volumes of the species standard states wrt pressure at the current T and P of the solution. More...
 
virtual void getIntEnergy_RT_ref (doublereal *urt) const
 Returns the vector of nondimensional internal Energies of the reference state at the current temperature of the solution and the reference pressure for each species. More...
 
virtual void setReferenceComposition (const doublereal *const x)
 Sets the reference composition. More...
 
virtual void getReferenceComposition (doublereal *const x) const
 Gets the reference composition. More...
 
doublereal enthalpy_mass () const
 Specific enthalpy. More...
 
doublereal intEnergy_mass () const
 Specific internal energy. More...
 
doublereal entropy_mass () const
 Specific entropy. More...
 
doublereal gibbs_mass () const
 Specific Gibbs function. More...
 
doublereal cp_mass () const
 Specific heat at constant pressure. More...
 
doublereal cv_mass () const
 Specific heat at constant volume. More...
 
void setElementPotentials (const vector_fp &lambda)
 Stores the element potentials in the ThermoPhase object. More...
 
bool getElementPotentials (doublereal *lambda) const
 Returns the element potentials stored in the ThermoPhase object. More...
 
virtual doublereal critTemperature () const
 Critical temperature (K). More...
 
virtual doublereal critPressure () const
 Critical pressure (Pa). More...
 
virtual doublereal critDensity () const
 Critical density (kg/m3). More...
 
virtual doublereal satTemperature (doublereal p) const
 Return the saturation temperature given the pressure. More...
 
virtual doublereal satPressure (doublereal t)
 Return the saturation pressure given the temperature. More...
 
virtual doublereal vaporFraction () const
 Return the fraction of vapor at the current conditions. More...
 
virtual void setState_Tsat (doublereal t, doublereal x)
 Set the state to a saturated system at a particular temperature. More...
 
virtual void setState_Psat (doublereal p, doublereal x)
 Set the state to a saturated system at a particular pressure. More...
 
void saveSpeciesData (const size_t k, const XML_Node *const data)
 Store a reference pointer to the XML tree containing the species data for this phase. More...
 
const std::vector< const
XML_Node * > & 
speciesData () const
 Return a pointer to the vector of XML nodes containing the species data for this phase. More...
 
void setSpeciesThermo (SpeciesThermo *spthermo)
 Install a species thermodynamic property manager. More...
 
virtual SpeciesThermospeciesThermo (int k=-1)
 Return a changeable reference to the calculation manager for species reference-state thermodynamic properties. More...
 
virtual void initThermoFile (const std::string &inputFile, const std::string &id)
 
virtual void installSlavePhases (Cantera::XML_Node *phaseNode)
 Add in species from Slave phases. More...
 
virtual void setParameters (int n, doublereal *const c)
 Set the equation of state parameters. More...
 
virtual void getParameters (int &n, doublereal *const c) const
 Get the equation of state parameters in a vector. More...
 
virtual void getdlnActCoeffds (const doublereal dTds, const doublereal *const dXds, doublereal *dlnActCoeffds) const
 Get the change in activity coefficients wrt changes in state (temp, mole fraction, etc) along a line in parameter space or along a line in physical space. More...
 
virtual void getdlnActCoeffdlnX_diag (doublereal *dlnActCoeffdlnX_diag) const
 Get the array of ln mole fraction derivatives of the log activity coefficients - diagonal component only. More...
 
virtual void getdlnActCoeffdlnN_numderiv (const size_t ld, doublereal *const dlnActCoeffdlnN)
 
virtual void reportCSV (std::ofstream &csvFile) const
 returns a summary of the state of the phase to a comma separated file. More...
 
virtual void setState_TPX (doublereal t, doublereal p, const doublereal *x)
 Set the temperature (K), pressure (Pa), and mole fractions. More...
 
virtual void setState_TPX (doublereal t, doublereal p, compositionMap &x)
 Set the temperature (K), pressure (Pa), and mole fractions. More...
 
virtual void setState_TPX (doublereal t, doublereal p, const std::string &x)
 Set the temperature (K), pressure (Pa), and mole fractions. More...
 
virtual void setState_TPY (doublereal t, doublereal p, const doublereal *y)
 Set the internally stored temperature (K), pressure (Pa), and mass fractions of the phase. More...
 
virtual void setState_TPY (doublereal t, doublereal p, compositionMap &y)
 Set the internally stored temperature (K), pressure (Pa), and mass fractions of the phase. More...
 
virtual void setState_TPY (doublereal t, doublereal p, const std::string &y)
 Set the internally stored temperature (K), pressure (Pa), and mass fractions of the phase. More...
 
virtual void setState_PX (doublereal p, doublereal *x)
 Set the pressure (Pa) and mole fractions. More...
 
virtual void setState_PY (doublereal p, doublereal *y)
 Set the internally stored pressure (Pa) and mass fractions. More...
 
virtual void setState_HP (doublereal h, doublereal p, doublereal tol=1.e-4)
 Set the internally stored specific enthalpy (J/kg) and pressure (Pa) of the phase. More...
 
virtual void setState_UV (doublereal u, doublereal v, doublereal tol=1.e-4)
 Set the specific internal energy (J/kg) and specific volume (m^3/kg). More...
 
virtual void setState_SP (doublereal s, doublereal p, doublereal tol=1.e-4)
 Set the specific entropy (J/kg/K) and pressure (Pa). More...
 
virtual void setState_SV (doublereal s, doublereal v, doublereal tol=1.e-4)
 Set the specific entropy (J/kg/K) and specific volume (m^3/kg). More...
 
- Public Member Functions inherited from Phase
 Phase ()
 Default constructor. More...
 
virtual ~Phase ()
 Destructor. More...
 
 Phase (const Phase &right)
 Copy Constructor. More...
 
Phaseoperator= (const Phase &right)
 Assignment operator. More...
 
XML_Nodexml ()
 Returns a reference to the XML_Node stored for the phase. More...
 
void saveState (vector_fp &state) const
 Save the current internal state of the phase Write to vector 'state' the current internal state. More...
 
void saveState (size_t lenstate, doublereal *state) const
 Write to array 'state' the current internal state. More...
 
void restoreState (const vector_fp &state)
 Restore a state saved on a previous call to saveState. More...
 
void restoreState (size_t lenstate, const doublereal *state)
 Restore the state of the phase from a previously saved state vector. More...
 
doublereal molecularWeight (size_t k) const
 Molecular weight of species k. More...
 
void getMolecularWeights (vector_fp &weights) const
 Copy the vector of molecular weights into vector weights. More...
 
void getMolecularWeights (doublereal *weights) const
 Copy the vector of molecular weights into array weights. More...
 
const vector_fpmolecularWeights () const
 Return a const reference to the internal vector of molecular weights. More...
 
doublereal size (size_t k) const
 This routine returns the size of species k. More...
 
doublereal charge (size_t k) const
 Dimensionless electrical charge of a single molecule of species k The charge is normalized by the the magnitude of the electron charge. More...
 
doublereal chargeDensity () const
 Charge density [C/m^3]. More...
 
size_t nDim () const
 Returns the number of spatial dimensions (1, 2, or 3) More...
 
void setNDim (size_t ndim)
 Set the number of spatial dimensions (1, 2, or 3). More...
 
virtual void freezeSpecies ()
 Call when finished adding species. More...
 
bool speciesFrozen ()
 True if freezeSpecies has been called. More...
 
virtual bool ready () const
 
int stateMFNumber () const
 Return the State Mole Fraction Number. More...
 
std::string id () const
 Return the string id for the phase. More...
 
void setID (const std::string &id)
 Set the string id for the phase. More...
 
std::string name () const
 Return the name of the phase. More...
 
void setName (const std::string &nm)
 Sets the string name for the phase. More...
 
std::string elementName (size_t m) const
 Name of the element with index m. More...
 
size_t elementIndex (const std::string &name) const
 Return the index of element named 'name'. More...
 
const std::vector< std::string > & elementNames () const
 Return a read-only reference to the vector of element names. More...
 
doublereal atomicWeight (size_t m) const
 Atomic weight of element m. More...
 
doublereal entropyElement298 (size_t m) const
 Entropy of the element in its standard state at 298 K and 1 bar. More...
 
int atomicNumber (size_t m) const
 Atomic number of element m. More...
 
int elementType (size_t m) const
 Return the element constraint type Possible types include: More...
 
int changeElementType (int m, int elem_type)
 Change the element type of the mth constraint Reassigns an element type. More...
 
const vector_fpatomicWeights () const
 Return a read-only reference to the vector of atomic weights. More...
 
size_t nElements () const
 Number of elements. More...
 
void checkElementIndex (size_t m) const
 Check that the specified element index is in range Throws an exception if m is greater than nElements()-1. More...
 
void checkElementArraySize (size_t mm) const
 Check that an array size is at least nElements() Throws an exception if mm is less than nElements(). More...
 
doublereal nAtoms (size_t k, size_t m) const
 Number of atoms of element m in species k. More...
 
void getAtoms (size_t k, double *atomArray) const
 Get a vector containing the atomic composition of species k. More...
 
size_t speciesIndex (const std::string &name) const
 Returns the index of a species named 'name' within the Phase object. More...
 
std::string speciesName (size_t k) const
 Name of the species with index k. More...
 
std::string speciesSPName (int k) const
 Returns the expanded species name of a species, including the phase name This is guaranteed to be unique within a Cantera problem. More...
 
const std::vector< std::string > & speciesNames () const
 Return a const reference to the vector of species names. More...
 
size_t nSpecies () const
 Returns the number of species in the phase. More...
 
void checkSpeciesIndex (size_t k) const
 Check that the specified species index is in range Throws an exception if k is greater than nSpecies()-1. More...
 
void checkSpeciesArraySize (size_t kk) const
 Check that an array size is at least nSpecies() Throws an exception if kk is less than nSpecies(). More...
 
void setMoleFractionsByName (compositionMap &xMap)
 Set the species mole fractions by name. More...
 
void setMoleFractionsByName (const std::string &x)
 Set the mole fractions of a group of species by name. More...
 
void setMassFractionsByName (compositionMap &yMap)
 Set the species mass fractions by name. More...
 
void setMassFractionsByName (const std::string &x)
 Set the species mass fractions by name. More...
 
void setState_TRX (doublereal t, doublereal dens, const doublereal *x)
 Set the internally stored temperature (K), density, and mole fractions. More...
 
void setState_TRX (doublereal t, doublereal dens, compositionMap &x)
 Set the internally stored temperature (K), density, and mole fractions. More...
 
void setState_TRY (doublereal t, doublereal dens, const doublereal *y)
 Set the internally stored temperature (K), density, and mass fractions. More...
 
void setState_TRY (doublereal t, doublereal dens, compositionMap &y)
 Set the internally stored temperature (K), density, and mass fractions. More...
 
void setState_TNX (doublereal t, doublereal n, const doublereal *x)
 Set the internally stored temperature (K), molar density (kmol/m^3), and mole fractions. More...
 
void setState_TR (doublereal t, doublereal rho)
 Set the internally stored temperature (K) and density (kg/m^3) More...
 
void setState_TX (doublereal t, doublereal *x)
 Set the internally stored temperature (K) and mole fractions. More...
 
void setState_TY (doublereal t, doublereal *y)
 Set the internally stored temperature (K) and mass fractions. More...
 
void setState_RX (doublereal rho, doublereal *x)
 Set the density (kg/m^3) and mole fractions. More...
 
void setState_RY (doublereal rho, doublereal *y)
 Set the density (kg/m^3) and mass fractions. More...
 
void getMoleFractionsByName (compositionMap &x) const
 Get the mole fractions by name. More...
 
doublereal moleFraction (size_t k) const
 Return the mole fraction of a single species. More...
 
doublereal moleFraction (const std::string &name) const
 Return the mole fraction of a single species. More...
 
doublereal massFraction (size_t k) const
 Return the mass fraction of a single species. More...
 
doublereal massFraction (const std::string &name) const
 Return the mass fraction of a single species. More...
 
void getMoleFractions (doublereal *const x) const
 Get the species mole fraction vector. More...
 
virtual void setMoleFractions (const doublereal *const x)
 Set the mole fractions to the specified values There is no restriction on the sum of the mole fraction vector. More...
 
virtual void setMoleFractions_NoNorm (const doublereal *const x)
 Set the mole fractions to the specified values without normalizing. More...
 
void getMassFractions (doublereal *const y) const
 Get the species mass fractions. More...
 
const doublereal * massFractions () const
 Return a const pointer to the mass fraction array. More...
 
virtual void setMassFractions (const doublereal *const y)
 Set the mass fractions to the specified values and normalize them. More...
 
virtual void setMassFractions_NoNorm (const doublereal *const y)
 Set the mass fractions to the specified values without normalizing. More...
 
void getConcentrations (doublereal *const c) const
 Get the species concentrations (kmol/m^3). More...
 
doublereal concentration (const size_t k) const
 Concentration of species k. More...
 
virtual void setConcentrations (const doublereal *const conc)
 Set the concentrations to the specified values within the phase. More...
 
const doublereal * moleFractdivMMW () const
 Returns a const pointer to the start of the moleFraction/MW array. More...
 
doublereal temperature () const
 Temperature (K). More...
 
virtual doublereal density () const
 Density (kg/m^3). More...
 
doublereal molarDensity () const
 Molar density (kmol/m^3). More...
 
doublereal molarVolume () const
 Molar volume (m^3/kmol). More...
 
virtual void setDensity (const doublereal density_)
 Set the internally stored density (kg/m^3) of the phase Note the density of a phase is an independent variable. More...
 
virtual void setMolarDensity (const doublereal molarDensity)
 Set the internally stored molar density (kmol/m^3) of the phase. More...
 
doublereal mean_X (const doublereal *const Q) const
 Evaluate the mole-fraction-weighted mean of an array Q. More...
 
doublereal mean_Y (const doublereal *const Q) const
 Evaluate the mass-fraction-weighted mean of an array Q. More...
 
doublereal meanMolecularWeight () const
 The mean molecular weight. Units: (kg/kmol) More...
 
doublereal sum_xlogx () const
 Evaluate \( \sum_k X_k \log X_k \). More...
 
doublereal sum_xlogQ (doublereal *const Q) const
 Evaluate \( \sum_k X_k \log Q_k \). More...
 
void addElement (const std::string &symbol, doublereal weight=-12345.0)
 Add an element. More...
 
void addElement (const XML_Node &e)
 Add an element from an XML specification. More...
 
void addUniqueElement (const std::string &symbol, doublereal weight=-12345.0, int atomicNumber=0, doublereal entropy298=ENTROPY298_UNKNOWN, int elem_type=CT_ELEM_TYPE_ABSPOS)
 Add an element, checking for uniqueness The uniqueness is checked by comparing the string symbol. More...
 
void addUniqueElement (const XML_Node &e)
 Add an element, checking for uniqueness The uniqueness is checked by comparing the string symbol. More...
 
void addElementsFromXML (const XML_Node &phase)
 Add all elements referenced in an XML_Node tree. More...
 
void freezeElements ()
 Prohibit addition of more elements, and prepare to add species. More...
 
bool elementsFrozen ()
 True if freezeElements has been called. More...
 
size_t addUniqueElementAfterFreeze (const std::string &symbol, doublereal weight, int atomicNumber, doublereal entropy298=ENTROPY298_UNKNOWN, int elem_type=CT_ELEM_TYPE_ABSPOS)
 Add an element after elements have been frozen, checking for uniqueness The uniqueness is checked by comparing the string symbol. More...
 
void addSpecies (const std::string &name, const doublereal *comp, doublereal charge=0.0, doublereal size=1.0)
 
void addUniqueSpecies (const std::string &name, const doublereal *comp, doublereal charge=0.0, doublereal size=1.0)
 Add a species to the phase, checking for uniqueness of the name This routine checks for uniqueness of the string name. More...
 

Protected Member Functions

virtual void getCsvReportData (std::vector< std::string > &names, std::vector< vector_fp > &data) const
 Fills names and data with the column names and species thermo properties to be included in the output of the reportCSV method. More...
 
virtual void getUnscaledMolalityActivityCoefficients (doublereal *acMolality) const
 Get the array of unscaled non-dimensional molality based activity coefficients at the current solution temperature, pressure, and solution concentration. More...
 
virtual void applyphScale (doublereal *acMolality) const
 Apply the current phScale to a set of activity Coefficients or activities. More...
 
- Protected Member Functions inherited from VPStandardStateTP
virtual void calcDensity ()
 Calculate the density of the mixture using the partial molar volumes and mole fractions as input. More...
 
virtual void _updateStandardStateThermo () const
 Updates the standard state thermodynamic functions at the current T and P of the solution. More...
 
const vector_fpGibbs_RT_ref () const
 
- Protected Member Functions inherited from Phase
void init (const vector_fp &mw)
 
void setMolecularWeight (const int k, const double mw)
 Set the molecular weight of a single species to a given value. More...
 

Protected Attributes

size_t m_indexSolvent
 Index of the solvent. More...
 
int m_pHScalingType
 Scaling to be used for output of single-ion species activity coefficients. More...
 
size_t m_indexCLM
 Index of the phScale species. More...
 
doublereal m_weightSolvent
 Molecular weight of the Solvent. More...
 
doublereal m_xmolSolventMIN
 
doublereal m_Mnaught
 This is the multiplication factor that goes inside log expressions involving the molalities of species. More...
 
vector_fp m_molalities
 Current value of the molalities of the species in the phase. More...
 
- Protected Attributes inherited from VPStandardStateTP
doublereal m_Pcurrent
 Current value of the pressure - state variable. More...
 
doublereal m_Tlast_ss
 The last temperature at which the standard statethermodynamic properties were calculated at. More...
 
doublereal m_Plast_ss
 The last pressure at which the Standard State thermodynamic properties were calculated at. More...
 
doublereal m_P0
 
VPSSMgrm_VPSS_ptr
 Pointer to the VPSS manager that calculates all of the standard state info efficiently. More...
 
std::vector< PDSS * > m_PDSS_storage
 Storage for the PDSS objects for the species. More...
 
- Protected Attributes inherited from ThermoPhase
SpeciesThermom_spthermo
 Pointer to the calculation manager for species reference-state thermodynamic properties. More...
 
std::vector< const XML_Node * > m_speciesData
 Vector of pointers to the species databases. More...
 
doublereal m_phi
 Stored value of the electric potential for this phase. More...
 
vector_fp m_lambdaRRT
 Vector of element potentials. More...
 
bool m_hasElementPotentials
 Boolean indicating whether there is a valid set of saved element potentials for this phase. More...
 
bool m_chargeNeutralityNecessary
 Boolean indicating whether a charge neutrality condition is a necessity. More...
 
int m_ssConvention
 Contains the standard state convention. More...
 
std::vector< doublereal > xMol_Ref
 Reference Mole Fraction Composition. More...
 
- Protected Attributes inherited from Phase
size_t m_kk
 Number of species in the phase. More...
 
size_t m_ndim
 Dimensionality of the phase. More...
 
vector_fp m_speciesComp
 Atomic composition of the species. More...
 
vector_fp m_speciesSize
 Vector of species sizes. More...
 
vector_fp m_speciesCharge
 Vector of species charges. length m_kk. More...
 

Private Member Functions

virtual size_t findCLMIndex () const
 Returns the index of the Cl- species. More...
 
void initLengths ()
 Initialize lengths of local variables after all species have been identified. More...
 
doublereal err (const std::string &msg) const
 Error function. More...
 

Detailed Description

MolalityVPSSTP is a derived class of ThermoPhase that handles variable pressure standard state methods for calculating thermodynamic properties that are further based on molality-scaled activities. This category incorporates most of the methods for calculating liquid electrolyte thermodynamics that have been developed since the 1970's.

This class adds additional functions onto the ThermoPhase interface that handle molality based standard states. The ThermoPhase class includes a member function, ThermoPhase::activityConvention() that indicates which convention the activities are based on. The default is to assume activities are based on the molar convention. However, classes which derive from the MolalityVPSSTP class return cAC_CONVENTION_MOLALITY from this member function.

The molality of a solute, \( m_i \), is defined as

\[ m_i = \frac{n_i}{\tilde{M}_o n_o} \]

where

\[ \tilde{M}_o = \frac{M_o}{1000} \]

where \( M_o \) is the molecular weight of the solvent. The molality has units of gmol kg-1. For the solute, the molality may be considered as the amount of gmol's of solute per kg of solvent, a natural experimental quantity.

The formulas for calculating mole fractions if given the molalities of the solutes is stated below. First calculate \( L^{sum} \), an intermediate quantity.

\[ L^{sum} = \frac{1}{\tilde{M}_o X_o} = \frac{1}{\tilde{M}_o} + \sum_{i\ne o} m_i \]

Then,

\[ X_o = \frac{1}{\tilde{M}_o L^{sum}} \]

\[ X_i = \frac{m_i}{L^{sum}} \]

where \( X_o \) is the mole fraction of solvent, and \( X_o \) is the mole fraction of solute i. Thus, the molality scale and the mole fraction scale offer a one-to-one mapping between each other, except in the limit of a zero solvent mole fraction.

The standard states for thermodynamic objects that derive from MolalityVPSSTP are on the unit molality basis. Chemical potentials of the solutes, \( \mu_k \), and the solvent, \( \mu_o \), which are based on the molality form, have the following general format:

\[ \mu_k = \mu^{\triangle}_k(T,P) + R T ln(\gamma_k^{\triangle} \frac{m_k}{m^\triangle}) \]

\[ \mu_o = \mu^o_o(T,P) + RT ln(a_o) \]

where \( \gamma_k^{\triangle} \) is the molality based activity coefficient for species \(k\).

The chemical potential of the solvent is thus expressed in a different format than the chemical potential of the solutes. Additionally, the activity of the solvent, \( a_o \), is further reexpressed in terms of an osmotic coefficient, \( \phi \).

\[ \phi = \frac{- ln(a_o)}{\tilde{M}_o \sum_{i \ne o} m_i} \]

MolalityVPSSTP::osmoticCoefficient() returns the value of \( \phi \). Note there are a few of definitions of the osmotic coefficient floating around. We use the one defined in (Activity Coefficients in Electrolyte Solutions, K. S. Pitzer CRC Press, Boca Raton, 1991, p. 85, Eqn. 28). This definition is most clearly related to theoretical calculation.

The molar-based activity coefficients \( \gamma_k \) may be calculated from the molality-based activity coefficients, \( \gamma_k^\triangle \) by the following formula.

\[ \gamma_k = \frac{\gamma_k^\triangle}{X_o} \]

For purposes of establishing a convention, the molar activity coefficient of the solvent is set equal to the molality-based activity coefficient of the solvent:

\[ \gamma_o = \gamma_o^\triangle \]

The molality-based and molarity-based standard states may be related to one another by the following formula.

\[ \mu_k^\triangle(T,P) = \mu_k^o(T,P) + R T \ln(\tilde{M}_o m^\triangle) \]

An important convention is followed in all routines that derive from MolalityVPSSTP. Standard state thermodynamic functions and reference state thermodynamic functions return the molality-based quantities. Also all functions which return activities return the molality-based activities. The reason for this convention has been discussed in supporting memos. However, it's important because the term in the equation above is non-trivial. For example it's equal to 2.38 kcal gmol-1 for water at 298 K.

In order to prevent a singularity, this class includes the concept of a minimum value for the solvent mole fraction. All calculations involving the formulation of activity coefficients and other non-ideal solution behavior adhere to this concept of a minimal value for the solvent mole fraction. This makes sense because these solution behavior were all designed and measured far away from the zero solvent singularity condition and are not applicable in that limit.

This objects add a layer that supports molality. It inherits from VPStandardStateTP.

All objects that derive from this are assumed to have molality based standard states.

Molality based activity coefficients are scaled according to the current pH scale. See the Eq3/6 manual for details.

Activity coefficients for species k may be altered between scales s1 to s2 using the following formula

\[ ln(\gamma_k^{s2}) = ln(\gamma_k^{s1}) + \frac{z_k}{z_j} \left( ln(\gamma_j^{s2}) - ln(\gamma_j^{s1}) \right) \]

where j is any one species. For the NBS scale, j is equal to the Cl- species and

\[ ln(\gamma_{Cl-}^{s2}) = \frac{-A_{\phi} \sqrt{I}}{1.0 + 1.5 \sqrt{I}} \]

The Pitzer scale doesn't actually change anything. The pitzer scale is defined as the raw unscaled activity coefficients produced by the underlying objects.

SetState Strategy

The MolalityVPSSTP object does not have a setState strategy concerning the molalities. It does not keep track of whether the molalities have changed. It's strictly an interfacial layer that writes the current mole fractions to the State object. When molalities are needed it recalculates the molalities from the State object's mole fraction vector.

Todo:
Make two solvent minimum fractions. One would be for calculation of the non-ideal factors. The other one would be for purposes of stoichiometry evaluation. the stoichiometry evaluation one would be a 1E-13 limit. Anything less would create problems with roundoff error.

Definition at line 189 of file MolalityVPSSTP.h.

Constructor & Destructor Documentation

Default Constructor.

This doesn't do much more than initialize constants with default values for water at 25C. Water molecular weight comes from the default elements.xml file. It actually differs slightly from the IAPWS95 value of 18.015268. However, density conservation and therefore element conservation is the more important principle to follow.

Definition at line 31 of file MolalityVPSSTP.cpp.

References ThermoPhase::m_chargeNeutralityNecessary.

Referenced by MolalityVPSSTP::duplMyselfAsThermoPhase().

Copy constructor.

Parameters
bclass to be copied

Definition at line 48 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::operator=().

Member Function Documentation

MolalityVPSSTP & operator= ( const MolalityVPSSTP b)
ThermoPhase * duplMyselfAsThermoPhase ( ) const
virtual

Duplication routine for objects which inherit from ThermoPhase.

This virtual routine can be used to duplicate objects inherited from ThermoPhase even if the application only has a pointer to ThermoPhase to work with.

Reimplemented from VPStandardStateTP.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 77 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::MolalityVPSSTP().

int eosType ( ) const
virtual

Equation of state type flag.

The ThermoPhase base class returns zero. Subclasses should define this to return a unique non-zero value. Known constants defined for this purpose are listed in mix_defs.h. The MolalityVPSSTP class also returns zero, as it is a non-complete class.

Reimplemented from VPStandardStateTP.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 86 of file MolalityVPSSTP.cpp.

Referenced by MolalityVPSSTP::err().

void setpHScale ( const int  pHscaleType)

Set the pH scale, which determines the scale for single-ion activity coefficients.

Single ion activity coefficients are not unique in terms of the representing actual measurable quantities.

Parameters
pHscaleTypeInteger representing the pHscale

Definition at line 91 of file MolalityVPSSTP.cpp.

References Cantera::int2str(), MolalityVPSSTP::m_pHScalingType, Cantera::PHSCALE_NBS, and Cantera::PHSCALE_PITZER.

int pHScale ( ) const

Reports the pH scale, which determines the scale for single-ion activity coefficients.

Single ion activity coefficients are not unique in terms of the representing actual measurable quantities.

Returns
Return the pHscale type

Definition at line 100 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::m_pHScalingType.

void setSolvent ( size_t  k)

This routine sets the index number of the solvent for the phase.

Note, having a solvent is a precursor to many things having to do with molality.

Parameters
kthe solvent index number

Definition at line 105 of file MolalityVPSSTP.cpp.

References AssertThrowMsg, MolalityVPSSTP::m_indexSolvent, Phase::m_kk, MolalityVPSSTP::m_Mnaught, MolalityVPSSTP::m_weightSolvent, and Phase::molecularWeight().

Referenced by MolalityVPSSTP::initThermo(), and MolalityVPSSTP::initThermoXML().

size_t solventIndex ( ) const

Returns the solvent index.

Definition at line 118 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::m_indexSolvent.

void setMoleFSolventMin ( doublereal  xmolSolventMIN)

Sets the minimum mole fraction in the molality formulation.

Note the molality formulation is singular in the limit that the solvent mole fraction goes to zero. Numerically, how this limit is treated and resolved is an ongoing issue within Cantera. The minimum mole fraction must be in the range 0 to 0.9.

Parameters
xmolSolventMINInput double containing the minimum mole fraction

Definition at line 124 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::m_xmolSolventMIN.

Referenced by IdealMolalSoln::initThermoXML().

doublereal moleFSolventMin ( ) const

Returns the minimum mole fraction in the molality formulation.

Definition at line 134 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::m_xmolSolventMIN.

void calcMolalities ( ) const

Calculates the molality of all species and stores the result internally.

We calculate the vector of molalities of the species in the phase and store the result internally:

\[ m_i = \frac{X_i}{1000 * M_o * X_{o,p}} \]

where

  • \( M_o \) is the molecular weight of the solvent
  • \( X_o \) is the mole fraction of the solvent
  • \( X_i \) is the mole fraction of the solute.
  • \( X_{o,p} = \max (X_{o}^{min}, X_o) \)
  • \( X_{o}^{min} \) = minimum mole fraction of solvent allowed in the denominator.

Definition at line 139 of file MolalityVPSSTP.cpp.

References DATA_PTR, Phase::getMoleFractions(), MolalityVPSSTP::m_indexSolvent, Phase::m_kk, MolalityVPSSTP::m_Mnaught, MolalityVPSSTP::m_molalities, and MolalityVPSSTP::m_xmolSolventMIN.

Referenced by DebyeHuckel::_lnactivityWaterHelgesonFixedForm(), IdealMolalSoln::getActivities(), IdealMolalSoln::getChemPotentials(), MolalityVPSSTP::getMolalities(), IdealMolalSoln::getPartialMolarEntropies(), HMWSoln::printCoeffs(), DebyeHuckel::s_update_lnMolalityActCoeff(), IdealMolalSoln::s_updateIMS_lnMolalityActCoeff(), HMWSoln::s_updateIMS_lnMolalityActCoeff(), MolalityVPSSTP::setMolalities(), and MolalityVPSSTP::setMolalitiesByName().

void getMolalities ( doublereal *const  molal) const

This function will return the molalities of the species.

We calculate the vector of molalities of the species in the phase

\[ m_i = \frac{X_i}{1000 * M_o * X_{o,p}} \]

where

  • \( M_o \) is the molecular weight of the solvent
  • \( X_o \) is the mole fraction of the solvent
  • \( X_i \) is the mole fraction of the solute.
  • \( X_{o,p} = \max (X_{o}^{min}, X_o) \)
  • \( X_{o}^{min} \) = minimum mole fraction of solvent allowed in the denominator.
Parameters
molalOutput vector of molalities. Length: m_kk.

Definition at line 152 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::calcMolalities(), Phase::m_kk, and MolalityVPSSTP::m_molalities.

Referenced by MolalityVPSSTP::getCsvReportData(), MolalityVPSSTP::report(), and vcs_MultiPhaseEquil::reportCSV().

void setMolalities ( const doublereal *const  molal)

Set the molalities of the solutes in a phase.

Note, the entry for the solvent is not used. We are supplied with the molalities of all of the solute species. We then calculate the mole fractions of all species and update the ThermoPhase object.

\[ m_i = \frac{X_i}{M_o/1000 * X_{o,p}} \]

where

  • \(M_o\) is the molecular weight of the solvent
  • \(X_o\) is the mole fraction of the solvent
  • \(X_i\) is the mole fraction of the solute.
  • \(X_{o,p} = \max(X_o^{min}, X_o)\)
  • \(X_o^{min}\) = minimum mole fraction of solvent allowed in the denominator.

The formulas for calculating mole fractions are

\[ L^{sum} = \frac{1}{\tilde{M}_o X_o} = \frac{1}{\tilde{M}_o} + \sum_{i\ne o} m_i \]

Then,

\[ X_o = \frac{1}{\tilde{M}_o L^{sum}} \]

\[ X_i = \frac{m_i}{L^{sum}} \]

It is currently an error if the solvent mole fraction is attempted to be set to a value lower than \(X_o^{min}\).

Parameters
molalInput vector of molalities. Length: m_kk.

Definition at line 160 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::calcMolalities(), DATA_PTR, MolalityVPSSTP::m_indexSolvent, Phase::m_kk, MolalityVPSSTP::m_Mnaught, MolalityVPSSTP::m_molalities, and Phase::setMoleFractions().

Referenced by MolalityVPSSTP::setState_TPM().

void setMolalitiesByName ( compositionMap xMap)

Set the molalities of a phase.

Set the molalities of the solutes in a phase. Note, the entry for the solvent is not used.

Parameters
xMapComposition Map containing the molalities.

Definition at line 189 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::calcMolalities(), Phase::charge(), DATA_PTR, Phase::getMoleFractions(), MolalityVPSSTP::m_indexSolvent, MolalityVPSSTP::m_Mnaught, MolalityVPSSTP::m_xmolSolventMIN, Cantera::npos, Phase::nSpecies(), Phase::setMoleFractions(), and Phase::speciesName().

Referenced by MolalityVPSSTP::setMolalitiesByName(), MolalityVPSSTP::setState_TPM(), and MolalityVPSSTP::setStateFromXML().

void setMolalitiesByName ( const std::string &  name)

Set the molalities of a phase.

Set the molalities of the solutes in a phase. Note, the entry for the solvent is not used.

Parameters
nameString containing the information for a composition map.

Definition at line 276 of file MolalityVPSSTP.cpp.

References Cantera::parseCompString(), MolalityVPSSTP::setMolalitiesByName(), and Phase::speciesNames().

int activityConvention ( ) const
virtual

This method returns the activity convention.

Currently, there are two activity conventions:

  • Molar-based activities: Unit activity of species at either a hypothetical pure solution of the species or at a hypothetical pure ideal solution at infinite dilution. cAC_CONVENTION_MOLAR 0 (default)
  • Molality based activities: unit activity of solutes at a hypothetical 1 molal solution referenced to infinite dilution at all pressures and temperatures. The solvent is still on molar basis. cAC_CONVENTION_MOLALITY 1

    We set the convention to molality here.

Reimplemented from ThermoPhase.

Definition at line 286 of file MolalityVPSSTP.cpp.

References Cantera::cAC_CONVENTION_MOLALITY.

void getActivityConcentrations ( doublereal *  c) const
virtual

This method returns an array of generalized concentrations \( C_k\) that are defined such that \( a_k = C_k / C^0_k, \) where \( C^0_k \) is a standard concentration defined below.

These generalized concentrations are used by kinetics manager classes to compute the forward and reverse rates of elementary reactions.

Parameters
cArray of generalized concentrations. The units depend upon the implementation of the reaction rate expressions within the phase.

Reimplemented from ThermoPhase.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 291 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err().

doublereal standardConcentration ( size_t  k = 0) const
virtual

The standard concentration \( C^0_k \) used to normalize the generalized concentration.

In many cases, this quantity will be the same for all species in a phase - for example, for an ideal gas \( C^0_k = P/\hat R T \). For this reason, this method returns a single value, instead of an array. However, for phases in which the standard concentration is species-specific (e.g. surface species of different sizes), this method may be called with an optional parameter indicating the species.

Parameters
kspecies index. Defaults to zero.

Reimplemented from ThermoPhase.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 296 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err().

doublereal logStandardConc ( size_t  k = 0) const
virtual

Returns the natural logarithm of the standard concentration of the kth species.

Parameters
kspecies index

Reimplemented from ThermoPhase.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 302 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err().

void getUnitsStandardConc ( double *  uA,
int  k = 0,
int  sizeUA = 6 
) const
virtual

Returns the units of the standard and generalized concentrations Note they have the same units, as their ratio is defined to be equal to the activity of the kth species in the solution, which is unitless.

This routine is used in print out applications where the units are needed. Usually, MKS units are assumed throughout the program and in the XML input files.

Parameters
uAOutput vector containing the units uA[0] = kmol units - default = 1 uA[1] = m units - default = -nDim(), the number of spatial dimensions in the Phase class. uA[2] = kg units - default = 0; uA[3] = Pa(pressure) units - default = 0; uA[4] = Temperature units - default = 0; uA[5] = time units - default = 0
kspecies index. Defaults to 0.
sizeUAoutput int containing the size of the vector. Currently, this is equal to 6.
Deprecated:

Reimplemented from ThermoPhase.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 370 of file MolalityVPSSTP.cpp.

References Phase::nDim().

void getActivities ( doublereal *  ac) const
virtual

Get the array of non-dimensional activities (molality based for this class and classes that derive from it) at the current solution temperature, pressure, and solution concentration.

All standard state properties for molality-based phases are evaluated consistent with the molality scale. Therefore, this function must return molality-based activities.

\[ a_i^\triangle = \gamma_k^{\triangle} \frac{m_k}{m^\triangle} \]

This function must be implemented in derived classes.

Parameters
acOutput vector of molality-based activities. Length: m_kk.

Reimplemented from ThermoPhase.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 308 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err().

Referenced by MolalityVPSSTP::getCsvReportData(), MolalityVPSSTP::osmoticCoefficient(), and MolalityVPSSTP::report().

void getActivityCoefficients ( doublereal *  ac) const
virtual

Get the array of non-dimensional activity coefficients at the current solution temperature, pressure, and solution concentration.

These are mole-fraction based activity coefficients. In this object, their calculation is based on translating the values of the molality-based activity coefficients. See Denbigh p. 278 for a thorough discussion.

The molar-based activity coefficients \( \gamma_k \) may be calculated from the molality-based activity coefficients, \( \gamma_k^\triangle \) by the following formula.

\[ \gamma_k = \frac{\gamma_k^\triangle}{X_o} \]

For purposes of establishing a convention, the molar activity coefficient of the solvent is set equal to the molality-based activity coefficient of the solvent:

\[ \gamma_o = \gamma_o^\triangle \]

Derived classes don't need to overload this function. This function is handled at this level.

Parameters
acOutput vector containing the mole-fraction based activity coefficients. length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 313 of file MolalityVPSSTP.cpp.

References AssertThrow, MolalityVPSSTP::getMolalityActivityCoefficients(), MolalityVPSSTP::m_indexSolvent, Phase::m_kk, MolalityVPSSTP::m_xmolSolventMIN, and Phase::moleFraction().

void getMolalityActivityCoefficients ( doublereal *  acMolality) const
virtual

Get the array of non-dimensional molality based activity coefficients at the current solution temperature, pressure, and solution concentration.

See Denbigh p. 278 for a thorough discussion. This class must be overwritten in classes which derive from MolalityVPSSTP. This function takes over from the molar-based activity coefficient calculation, getActivityCoefficients(), in derived classes.

These molality based activity coefficients are scaled according to the current pH scale. See the Eq3/6 manual for details.

Activity coefficients for species k may be altered between scales s1 to s2 using the following formula

\[ ln(\gamma_k^{s2}) = ln(\gamma_k^{s1}) + \frac{z_k}{z_j} \left( ln(\gamma_j^{s2}) - ln(\gamma_j^{s1}) \right) \]

where j is any one species. For the NBS scale, j is equal to the Cl- species and

\[ ln(\gamma_{Cl-}^{s2}) = \frac{-A_{\phi} \sqrt{I}}{1.0 + 1.5 \sqrt{I}} \]

Parameters
acMolalityOutput vector containing the molality based activity coefficients. length: m_kk.

Reimplemented in DebyeHuckel, and IdealMolalSoln.

Definition at line 326 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::applyphScale(), and MolalityVPSSTP::getUnscaledMolalityActivityCoefficients().

Referenced by MolalityVPSSTP::getActivityCoefficients(), MolalityVPSSTP::getCsvReportData(), and MolalityVPSSTP::report().

doublereal osmoticCoefficient ( ) const
virtual

Calculate the osmotic coefficient.

\[ \phi = \frac{- ln(a_o)}{\tilde{M}_o \sum_{i \ne o} m_i} \]

Note there are a few of definitions of the osmotic coefficient floating around. We use the one defined in (Activity Coefficients in Electrolyte Solutions, K. S. Pitzer CRC Press, Boca Raton, 1991, p. 85, Eqn. 28). This definition is most clearly related to theoretical calculation.

units = dimensionless

Definition at line 332 of file MolalityVPSSTP.cpp.

References DATA_PTR, MolalityVPSSTP::getActivities(), MolalityVPSSTP::m_indexSolvent, Phase::m_kk, MolalityVPSSTP::m_Mnaught, and MolalityVPSSTP::m_molalities.

void getElectrochemPotentials ( doublereal *  mu) const

Get the species electrochemical potentials.

These are partial molar quantities. This method adds a term \( Fz_k \phi_k \) to each chemical potential.

Units: J/kmol

Parameters
muoutput vector containing the species electrochemical potentials. Length: m_kk.

Definition at line 354 of file MolalityVPSSTP.cpp.

References Phase::charge(), ThermoPhase::electricPotential(), ThermoPhase::getChemPotentials(), and Phase::m_kk.

void setToEquilState ( const doublereal *  lambda_RT)
virtual

This method is used by the ChemEquil element-potential based equilibrium solver.

It sets the state such that the chemical potentials of the species within the current phase satisfy

\[ \frac{\mu_k}{\hat R T} = \sum_m A_{k,m} \left(\frac{\lambda_m} {\hat R T}\right) \]

where \( \lambda_m \) is the element potential of element m. The temperature is unchanged. Any phase (ideal or not) that implements this method can be equilibrated by ChemEquil.

Parameters
lambda_RTInput vector containing the dimensionless element potentials.

Reimplemented from ThermoPhase.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 394 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err(), and VPStandardStateTP::updateStandardStateThermo().

void setStateFromXML ( const XML_Node state)
virtual

Set equation of state parameter values from XML entries.

This method is called by function importPhase() in file importCTML.cpp when processing a phase definition in an input file. It should be overloaded in subclasses to set any parameters that are specific to that particular phase model.

The MolalityVPSSTP object defines a new method for setting the concentrations of a phase. The new method is defined by a block called "soluteMolalities". If this block is found, the concentrations within that phase are set to the "name":"molalities pairs found within that XML block. The solvent concentration is then set to everything else.

The function first calls the overloaded function, VPStandardStateTP::setStateFromXML(), to pick up the parent class behavior.

usage: Overloaded functions should call this function before carrying out their own behavior.

Parameters
stateAn XML_Node object corresponding to the "state" entry for this phase in the input file.

Reimplemented from ThermoPhase.

Definition at line 400 of file MolalityVPSSTP.cpp.

References ctml::getChildValue(), ctml::getFloat(), XML_Node::hasChild(), MolalityVPSSTP::setMolalitiesByName(), VPStandardStateTP::setPressure(), and ThermoPhase::setStateFromXML().

Referenced by IdealMolalSoln::initThermoXML(), and DebyeHuckel::initThermoXML().

void initThermo ( )
virtual

Initialize the ThermoPhase object after all species have been set up.

Initialize.

This method is provided to allow subclasses to perform any initialization required after all species have been added. For example, it might be used to resize internal work arrays that must have an entry for each species. The base class implementation does nothing, and subclasses that do not require initialization do not need to overload this method. When importing a CTML phase description, this method is called from ThermoPhase::initThermoXML(), which is called from importPhase(), just prior to returning from function importPhase().

See Also
importCTML.cpp

Reimplemented from VPStandardStateTP.

Reimplemented in HMWSoln, DebyeHuckel, and IdealMolalSoln.

Definition at line 433 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::findCLMIndex(), MolalityVPSSTP::initLengths(), VPStandardStateTP::initThermo(), MolalityVPSSTP::m_indexCLM, and MolalityVPSSTP::setSolvent().

Referenced by IdealMolalSoln::initThermo(), and DebyeHuckel::initThermo().

void initThermoXML ( XML_Node phaseNode,
const std::string &  id 
)
virtual

Import and initialize a ThermoPhase object.

Parameters
phaseNodeThis object must be the phase node of a complete XML tree description of the phase, including all of the species data. In other words while "phase" must point to an XML phase object, it must have sibling nodes "speciesData" that describe the species in the phase.
idID of the phase. If nonnull, a check is done to see if phaseNode is pointing to the phase with the correct id.

Reimplemented from VPStandardStateTP.

Definition at line 523 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::initLengths(), VPStandardStateTP::initThermoXML(), and MolalityVPSSTP::setSolvent().

Referenced by IdealMolalSoln::initThermoXML().

void setState_TPM ( doublereal  t,
doublereal  p,
const doublereal *const  molalities 
)

Set the temperature (K), pressure (Pa), and molalities (gmol kg-1) of the solutes.

Parameters
tTemperature (K)
pPressure (Pa)
molalitiesInput vector of molalities of the solutes. Length: m_kk.

Definition at line 413 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::setMolalities(), and VPStandardStateTP::setState_TP().

void setState_TPM ( doublereal  t,
doublereal  p,
compositionMap m 
)

Set the temperature (K), pressure (Pa), and molalities.

Parameters
tTemperature (K)
pPressure (Pa)
mcompositionMap containing the molalities

Definition at line 420 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::setMolalitiesByName(), and VPStandardStateTP::setState_TP().

void setState_TPM ( doublereal  t,
doublereal  p,
const std::string &  m 
)

Set the temperature (K), pressure (Pa), and molalities.

Parameters
tTemperature (K)
pPressure (Pa)
mString which gets translated into a composition map for the molalities of the solutes.

Definition at line 426 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::setMolalitiesByName(), and VPStandardStateTP::setState_TP().

virtual void getdlnActCoeffdlnN ( const size_t  ld,
doublereal *const  dlnActCoeffdlnN 
)
inlinevirtual

Get the array of derivatives of the log activity coefficients with respect to the log of the species mole numbers.

Implementations should take the derivative of the logarithm of the activity coefficient with respect to a species log mole number (with all other species mole numbers held constant). The default treatment in the ThermoPhase object is to set this vector to zero.

units = 1 / kmol

dlnActCoeffdlnN[ ld * k + m] will contain the derivative of log act_coeff for the mth species with respect to the number of moles of the kth species.

\[ \frac{d \ln(\gamma_m) }{d \ln( n_k ) }\Bigg|_{n_i} \]

Parameters
ldNumber of rows in the matrix
dlnActCoeffdlnNOutput vector of derivatives of the log Activity Coefficients. length = m_kk * m_kk

Reimplemented from ThermoPhase.

Definition at line 712 of file MolalityVPSSTP.h.

std::string report ( bool  show_thermo = true) const
virtual
void getCsvReportData ( std::vector< std::string > &  names,
std::vector< vector_fp > &  data 
) const
protectedvirtual
void getUnscaledMolalityActivityCoefficients ( doublereal *  acMolality) const
protectedvirtual

Get the array of unscaled non-dimensional molality based activity coefficients at the current solution temperature, pressure, and solution concentration.

See Denbigh p. 278 for a thorough discussion. This class must be overwritten in classes which derive from MolalityVPSSTP. This function takes over from the molar-based activity coefficient calculation, getActivityCoefficients(), in derived classes.

Parameters
acMolalityOutput vector containing the molality based activity coefficients. length: m_kk.

Reimplemented in HMWSoln.

Definition at line 448 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err().

Referenced by MolalityVPSSTP::getMolalityActivityCoefficients().

void applyphScale ( doublereal *  acMolality) const
protectedvirtual

Apply the current phScale to a set of activity Coefficients or activities.

See the Eq3/6 Manual for a thorough discussion.

Parameters
acMolalityinput/Output vector containing the molality based activity coefficients. length: m_kk.

Reimplemented in HMWSoln.

Definition at line 453 of file MolalityVPSSTP.cpp.

References MolalityVPSSTP::err().

Referenced by MolalityVPSSTP::getMolalityActivityCoefficients().

size_t findCLMIndex ( ) const
privatevirtual

Returns the index of the Cl- species.

The Cl- species is special in the sense that its single ion molality-based activity coefficient is used in the specification of the pH scale for single ions. Therefore, we need to know what species index is Cl-. If the species isn't in the species list then this routine returns -1, and we can't use the NBS pH scale.

Right now we use a restrictive interpretation. The species must be named "Cl-". It must consist of exactly one Cl and one E atom.

Definition at line 458 of file MolalityVPSSTP.cpp.

References Phase::elementName(), Phase::m_kk, Phase::nAtoms(), Phase::nElements(), Cantera::npos, and Phase::speciesName().

Referenced by MolalityVPSSTP::initThermo().

void initLengths ( )
private

Initialize lengths of local variables after all species have been identified.

Definition at line 517 of file MolalityVPSSTP.cpp.

References Phase::m_kk, MolalityVPSSTP::m_molalities, and Phase::nSpecies().

Referenced by MolalityVPSSTP::initThermo(), and MolalityVPSSTP::initThermoXML().

doublereal err ( const std::string &  msg) const
private

Member Data Documentation

size_t m_indexSolvent
protected

Index of the solvent.

Currently the index of the solvent is hard-coded to the value 0

Definition at line 777 of file MolalityVPSSTP.h.

Referenced by DebyeHuckel::_lnactivityWaterHelgesonFixedForm(), MolalityVPSSTP::calcMolalities(), HMWSoln::calcMolalitiesCropped(), IdealMolalSoln::getActivities(), DebyeHuckel::getActivities(), HMWSoln::getActivities(), MolalityVPSSTP::getActivityCoefficients(), IdealMolalSoln::getChemPotentials(), DebyeHuckel::getChemPotentials(), HMWSoln::getChemPotentials(), IdealMolalSoln::getMolalityActivityCoefficients(), IdealMolalSoln::getPartialMolarEntropies(), DebyeHuckel::getPartialMolarEntropies(), HMWSoln::getPartialMolarEntropies(), IdealMolalSoln::initThermoXML(), DebyeHuckel::initThermoXML(), MolalityVPSSTP::operator=(), MolalityVPSSTP::osmoticCoefficient(), DebyeHuckel::s_update_d2lnMolalityActCoeff_dT2(), DebyeHuckel::s_update_dlnMolalityActCoeff_dP(), DebyeHuckel::s_update_dlnMolalityActCoeff_dT(), DebyeHuckel::s_update_lnMolalityActCoeff(), IdealMolalSoln::s_updateIMS_lnMolalityActCoeff(), HMWSoln::s_updateIMS_lnMolalityActCoeff(), HMWSoln::s_updatePitzer_d2lnMolalityActCoeff_dT2(), HMWSoln::s_updatePitzer_dlnMolalityActCoeff_dP(), HMWSoln::s_updatePitzer_dlnMolalityActCoeff_dT(), HMWSoln::s_updatePitzer_lnMolalityActCoeff(), MolalityVPSSTP::setMolalities(), MolalityVPSSTP::setMolalitiesByName(), MolalityVPSSTP::setSolvent(), MolalityVPSSTP::solventIndex(), IdealMolalSoln::standardConcentration(), DebyeHuckel::standardConcentration(), and HMWSoln::standardConcentration().

int m_pHScalingType
protected

Scaling to be used for output of single-ion species activity coefficients.

Index of the species to be used in the single-ion scaling law. This is the identity of the Cl- species for the PHSCALE_NBS scaling. Either PHSCALE_PITZER or PHSCALE_NBS

Definition at line 787 of file MolalityVPSSTP.h.

Referenced by HMWSoln::applyphScale(), MolalityVPSSTP::operator=(), MolalityVPSSTP::pHScale(), HMWSoln::s_updateScaling_pHScaling(), HMWSoln::s_updateScaling_pHScaling_dP(), HMWSoln::s_updateScaling_pHScaling_dT(), HMWSoln::s_updateScaling_pHScaling_dT2(), and MolalityVPSSTP::setpHScale().

size_t m_indexCLM
protected

Index of the phScale species.

Index of the species to be used in the single-ion scaling law. This is the identity of the Cl- species for the PHSCALE_NBS scaling

Definition at line 795 of file MolalityVPSSTP.h.

Referenced by HMWSoln::applyphScale(), MolalityVPSSTP::initThermo(), MolalityVPSSTP::operator=(), HMWSoln::s_updateScaling_pHScaling(), HMWSoln::s_updateScaling_pHScaling_dP(), HMWSoln::s_updateScaling_pHScaling_dT(), and HMWSoln::s_updateScaling_pHScaling_dT2().

doublereal m_weightSolvent
protected
doublereal m_xmolSolventMIN
protected

In any molality implementation, it makes sense to have a minimum solvent mole fraction requirement, since the implementation becomes singular in the xmolSolvent=0 limit. The default is to set it to 0.01. We then modify the molality definition to ensure that molal_solvent = 0 when xmol_solvent = 0.

Definition at line 808 of file MolalityVPSSTP.h.

Referenced by MolalityVPSSTP::calcMolalities(), IdealMolalSoln::getActivities(), MolalityVPSSTP::getActivityCoefficients(), IdealMolalSoln::getMolalityActivityCoefficients(), MolalityVPSSTP::moleFSolventMin(), MolalityVPSSTP::operator=(), IdealMolalSoln::s_updateIMS_lnMolalityActCoeff(), HMWSoln::s_updateIMS_lnMolalityActCoeff(), HMWSoln::s_updatePitzer_lnMolalityActCoeff(), MolalityVPSSTP::setMolalitiesByName(), and MolalityVPSSTP::setMoleFSolventMin().

doublereal m_Mnaught
protected
vector_fp m_molalities
mutableprotected

The documentation for this class was generated from the following files: