Handles any number of species in a reaction, including fractional stoichiometric coefficients, and arbitrary reaction orders. More...

#include <StoichManager.h>

Public Member Functions
	C_AnyN (size_t rxn, const std::vector< size_t > &ic, const vector_fp &order, const vector_fp &stoich)

	C_AnyN (const C_AnyN &right)

C_AnyN &	operator= (const C_AnyN &right)

size_t	data (std::vector< size_t > &ic)

doublereal	order (size_t n) const

doublereal	stoich (size_t n) const

size_t	speciesIndex (size_t n) const

void	multiply (const doublereal input, doublereal output) const

void	incrementSpecies (const doublereal input, doublereal output) const

void	decrementSpecies (const doublereal input, doublereal output) const

void	incrementReaction (const doublereal input, doublereal output) const

void	decrementReaction (const doublereal input, doublereal output) const

void	writeMultiply (std::string r, std::map< size_t, std::string > &out)

void	writeIncrementReaction (std::string r, std::map< size_t, std::string > &out)

void	writeDecrementReaction (std::string r, std::map< size_t, std::string > &out)

void	writeIncrementSpecies (std::string r, std::map< size_t, std::string > &out)

void	writeDecrementSpecies (std::string r, std::map< size_t, std::string > &out)

Private Attributes
size_t	m_n
	Length of the m_ic vector.

size_t	m_rxn
	ID of the reaction corresponding to this stoichiometric manager.

std::vector< size_t >	m_ic
	Vector of species which are involved with this stoichiometric manager calculations.

vector_fp	m_order

vector_fp	m_stoich

Detailed Description

Handles any number of species in a reaction, including fractional stoichiometric coefficients, and arbitrary reaction orders.

Definition at line 453 of file StoichManager.h.

Member Data Documentation

size_t m_n

private

Length of the m_ic vector.

This is the number of species which have non-zero entries in either the reaction order matrix or the stoichiometric order matrix for this reaction.

Definition at line 595 of file StoichManager.h.

size_t m_rxn

private

ID of the reaction corresponding to this stoichiometric manager.

This is used within the interface to select the

Definition at line 601 of file StoichManager.h.

std::vector<size_t> m_ic

private

Vector of species which are involved with this stoichiometric manager calculations.

This is an integer list of species which have non-zero entries in either the reaction order matrix or the stoichiometric order matrix for this reaction, m_rxn. It's used as the index into the arrays m_order[] and m_stoich[].

Definition at line 609 of file StoichManager.h.

The documentation for this class was generated from the following file:

StoichManager.h

Public Member Functions

Private Attributes

Detailed Description

Member Data Documentation