C3 Class Reference

Handles three species in a reaction. More...

#include <StoichManager.h>

Detailed Description

Handles three species in a reaction.

See Stoichiometry

Definition at line 258 of file StoichManager.h.

Public Member Functions
	C3 (size_t rxn=0, size_t ic0=0, size_t ic1=0, size_t ic2=0)
void	incrementSpecies (span< const double > R, span< double > S) const
void	decrementSpecies (span< const double > R, span< double > S) const
void	multiply (span< const double > S, span< double > R) const
void	incrementReaction (span< const double > S, span< double > R) const
void	decrementReaction (span< const double > S, span< double > R) const
void	resizeCoeffs (const map< pair< size_t, size_t >, size_t > &indices)
void	derivatives (span< const double > S, span< const double > R, span< double > jac) const
void	scale (span< const double > R, span< double > out, double factor) const

Private Attributes
size_t	m_rxn
size_t	m_ic0
size_t	m_ic1
size_t	m_ic2
size_t	m_jc0
size_t	m_jc1
size_t	m_jc2
	Indices in derivative triplet vector.

Constructor & Destructor Documentation

C3()

C3 ( size_t rxn = 0, size_t ic0 = 0, size_t ic1 = 0, size_t ic2 = 0 )

inline

Definition at line 261 of file StoichManager.h.

Member Function Documentation

incrementSpecies()

void incrementSpecies ( span< const double > R, span< double > S ) const

inline

Definition at line 264 of file StoichManager.h.

decrementSpecies()

void decrementSpecies ( span< const double > R, span< double > S ) const

inline

Definition at line 270 of file StoichManager.h.

multiply()

void multiply ( span< const double > S, span< double > R ) const

inline

Definition at line 276 of file StoichManager.h.

incrementReaction()

void incrementReaction ( span< const double > S, span< double > R ) const

inline

Definition at line 285 of file StoichManager.h.

decrementReaction()

void decrementReaction ( span< const double > S, span< double > R ) const

inline

Definition at line 289 of file StoichManager.h.

resizeCoeffs()

void resizeCoeffs ( const map< pair< size_t, size_t >, size_t > & indices )

inline

Definition at line 293 of file StoichManager.h.

derivatives()

void derivatives ( span< const double > S, span< const double > R, span< double > jac ) const

inline

Definition at line 300 of file StoichManager.h.

scale()

void scale ( span< const double > R, span< double > out, double factor ) const

inline

Definition at line 314 of file StoichManager.h.

Member Data Documentation

m_rxn

size_t m_rxn

private

Definition at line 320 of file StoichManager.h.

m_ic0

size_t m_ic0

private

Definition at line 321 of file StoichManager.h.

m_ic1

size_t m_ic1

private

Definition at line 322 of file StoichManager.h.

m_ic2

size_t m_ic2

private

Definition at line 323 of file StoichManager.h.

m_jc0

size_t m_jc0

private

Definition at line 325 of file StoichManager.h.

m_jc1

size_t m_jc1

private

Definition at line 325 of file StoichManager.h.

m_jc2

size_t m_jc2

private

Indices in derivative triplet vector.

Definition at line 325 of file StoichManager.h.

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The documentation for this class was generated from the following file:

• StoichManager.h