Abstract base class for ODE system integrators. More...

#include <Integrator.h>

Inheritance diagram for Integrator:

Detailed Description

Abstract base class for ODE system integrators.

Definition at line 43 of file Integrator.h.

Public Member Functions
	Integrator ()
	Default Constructor.

virtual	~Integrator ()
	Destructor.

virtual void	setTolerances (double reltol, size_t n, double *abstol)
	Set error tolerances.

virtual void	setTolerances (double reltol, double abstol)
	Set error tolerances.

virtual void	setSensitivityTolerances (double reltol, double abstol)
	Set the sensitivity error tolerances.

virtual void	setLinearSolverType (const string &linSolverType)
	Set the linear solver type.

virtual void	setPreconditioner (shared_ptr< PreconditionerBase > preconditioner)
	Set preconditioner used by the linear solver.

virtual void	preconditionerSolve (size_t stateSize, double rhs, double output)
	Solve a linear system Ax=b where A is the preconditioner.

virtual PreconditionerSide	preconditionerSide ()
	Return the side of the system on which the preconditioner is applied.

virtual shared_ptr< PreconditionerBase >	preconditioner ()
	Return preconditioner reference to object.

virtual string	linearSolverType () const
	Return the integrator problem type.

virtual void	initialize (double t0, FuncEval &func)
	Initialize the integrator for a new problem.

virtual void	reinitialize (double t0, FuncEval &func)

virtual void	integrate (double tout)
	Integrate the system of equations.

virtual double	step (double tout)
	Integrate the system of equations.

virtual double &	solution (size_t k)
	The current value of the solution of equation k.

virtual double *	solution ()
	The current value of the solution of the system of equations.

virtual double *	derivative (double tout, int n)
	n-th derivative of the output function at time tout.

virtual int	lastOrder () const
	Order used during the last solution step.

virtual int	nEquations () const
	The number of equations.

virtual int	nEvals () const
	The number of function evaluations.

virtual int	maxOrder () const

virtual void	setMaxOrder (int n)
	Set the maximum integration order that will be used.

virtual void	setMethod (MethodType t)
	Set the solution method.

virtual void	setMaxStepSize (double hmax)
	Set the maximum step size.

virtual void	setMinStepSize (double hmin)
	Set the minimum step size.

virtual void	setMaxErrTestFails (int n)
	Set the maximum permissible number of error test failures.

virtual void	setMaxSteps (int nmax)
	Set the maximum number of time-steps the integrator can take before reaching the next output time.

virtual int	maxSteps ()
	Returns the maximum number of time-steps the integrator can take before reaching the next output time.

virtual void	setBandwidth (int N_Upper, int N_Lower)

virtual int	nSensParams ()

virtual double	sensitivity (size_t k, size_t p)

virtual AnyMap	solverStats () const
	Get solver stats from integrator.

virtual int	maxNonlinIterations () const

virtual void	setMaxNonlinIterations (int n)

virtual int	maxNonlinConvFailures () const

virtual void	setMaxNonlinConvFailures (int n)

virtual bool	algebraicInErrorTest () const

virtual void	includeAlgebraicInErrorTest (bool yesno)

Protected Attributes
shared_ptr< PreconditionerBase >	m_preconditioner
	Pointer to preconditioner object used in integration which is set by setPreconditioner and initialized inside of ReactorNet::initialize()

PreconditionerSide	m_prec_side = PreconditionerSide::NO_PRECONDITION
	Type of preconditioning used in applyOptions.

Private Member Functions
void	warn (const string &msg) const

Private Attributes
double	m_dummy

Constructor & Destructor Documentation

◆ Integrator()

Integrator ( )

inline

Default Constructor.

Definition at line 47 of file Integrator.h.

◆ ~Integrator()

virtual ~Integrator ( )

inlinevirtual

Destructor.

Definition at line 51 of file Integrator.h.

Member Function Documentation

◆ setTolerances() [1/2]

virtual void setTolerances	(	double	reltol,
		size_t	n,
		double *	abstol
	)

inlinevirtual

Set error tolerances.

Parameters

reltol	scalar relative tolerance
n	Number of equations
abstol	array of N absolute tolerance values

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 60 of file Integrator.h.

◆ setTolerances() [2/2]

virtual void setTolerances	(	double	reltol,
		double	abstol
	)

inlinevirtual

Set error tolerances.

Parameters

reltol	scalar relative tolerance
abstol	scalar absolute tolerance

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 70 of file Integrator.h.

◆ setSensitivityTolerances()

virtual void setSensitivityTolerances	(	double	reltol,
		double	abstol
	)

inlinevirtual

Set the sensitivity error tolerances.

Parameters

reltol	scalar relative tolerance
abstol	scalar absolute tolerance

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 79 of file Integrator.h.

◆ setLinearSolverType()

virtual void setLinearSolverType ( const string & linSolverType )

inlinevirtual

Set the linear solver type.

Parameters

linSolverType Type of the linear solver

Reimplemented in IdasIntegrator, and CVodesIntegrator.

Definition at line 86 of file Integrator.h.

◆ setPreconditioner()

virtual void setPreconditioner ( shared_ptr< PreconditionerBase > preconditioner )

inlinevirtual

Set preconditioner used by the linear solver.

Parameters

preconditioner preconditioner object used for the linear solver

Definition at line 94 of file Integrator.h.

◆ preconditionerSolve()

virtual void preconditionerSolve	(	size_t	stateSize,
		double *	rhs,
		double *	output
	)

inlinevirtual

Solve a linear system Ax=b where A is the preconditioner.

Parameters

[in]	stateSize	length of the rhs and output vectors
[in]	rhs	right hand side vector used in linear system
[out]	output	output vector for solution

Definition at line 116 of file Integrator.h.

◆ preconditionerSide()

virtual PreconditionerSide preconditionerSide ( )

inlinevirtual

Return the side of the system on which the preconditioner is applied.

Definition at line 121 of file Integrator.h.

◆ preconditioner()

virtual shared_ptr< PreconditionerBase > preconditioner ( )

inlinevirtual

Return preconditioner reference to object.

Definition at line 126 of file Integrator.h.

◆ linearSolverType()

virtual string linearSolverType ( ) const

inlinevirtual

Return the integrator problem type.

Reimplemented in CVodesIntegrator.

Definition at line 131 of file Integrator.h.

◆ initialize()

virtual void initialize	(	double	t0,
		FuncEval &	func
	)

inlinevirtual

Initialize the integrator for a new problem.

Call after all options have been set.

Parameters

t0	initial time
func	RHS evaluator object for system of equations.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 142 of file Integrator.h.

◆ reinitialize()

virtual void reinitialize	(	double	t0,
		FuncEval &	func
	)

inlinevirtual

Definition at line 146 of file Integrator.h.

◆ integrate()

virtual void integrate ( double tout )

inlinevirtual

Integrate the system of equations.

Parameters

tout	Integrate to this time. Note that this is the absolute time value, not a time interval.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 155 of file Integrator.h.

◆ step()

virtual double step ( double tout )

inlinevirtual

Integrate the system of equations.

Parameters

tout	integrate to this time. Note that this is the absolute time value, not a time interval.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 164 of file Integrator.h.

◆ solution() [1/2]

virtual double & solution ( size_t k )

inlinevirtual

The current value of the solution of equation k.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 170 of file Integrator.h.

◆ solution() [2/2]

virtual double * solution ( )

inlinevirtual

The current value of the solution of the system of equations.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 176 of file Integrator.h.

◆ derivative()

virtual double * derivative	(	double	tout,
		int	n
	)

inlinevirtual

n-th derivative of the output function at time tout.

Reimplemented in CVodesIntegrator.

Definition at line 182 of file Integrator.h.

◆ lastOrder()

virtual int lastOrder ( ) const

inlinevirtual

Order used during the last solution step.

Reimplemented in CVodesIntegrator.

Definition at line 188 of file Integrator.h.

◆ nEquations()

virtual int nEquations ( ) const

inlinevirtual

The number of equations.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 194 of file Integrator.h.

◆ nEvals()

virtual int nEvals ( ) const

inlinevirtual

The number of function evaluations.

Reimplemented in CVodesIntegrator.

Definition at line 200 of file Integrator.h.

◆ maxOrder()

virtual int maxOrder ( ) const

inlinevirtual

Definition at line 205 of file Integrator.h.

◆ setMaxOrder()

virtual void setMaxOrder ( int n )

inlinevirtual

Set the maximum integration order that will be used.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 211 of file Integrator.h.

◆ setMethod()

virtual void setMethod ( MethodType t )

inlinevirtual

Set the solution method.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 216 of file Integrator.h.

◆ setMaxStepSize()

virtual void setMaxStepSize ( double hmax )

inlinevirtual

Set the maximum step size.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 221 of file Integrator.h.

◆ setMinStepSize()

virtual void setMinStepSize ( double hmin )

inlinevirtual

Set the minimum step size.

Reimplemented in CVodesIntegrator.

Definition at line 226 of file Integrator.h.

◆ setMaxErrTestFails()

virtual void setMaxErrTestFails ( int n )

inlinevirtual

Set the maximum permissible number of error test failures.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 231 of file Integrator.h.

◆ setMaxSteps()

virtual void setMaxSteps ( int nmax )

inlinevirtual

Set the maximum number of time-steps the integrator can take before reaching the next output time.

Parameters

nmax	The maximum number of steps, setting this value to zero disables this option.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 239 of file Integrator.h.

◆ maxSteps()

virtual int maxSteps ( )

inlinevirtual

Returns the maximum number of time-steps the integrator can take before reaching the next output time.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 245 of file Integrator.h.

◆ setBandwidth()

virtual void setBandwidth	(	int	N_Upper,
		int	N_Lower
	)

inlinevirtual

Definition at line 250 of file Integrator.h.

◆ nSensParams()

virtual int nSensParams ( )

inlinevirtual

Definition at line 254 of file Integrator.h.

◆ sensitivity()

virtual double sensitivity	(	size_t	k,
		size_t	p
	)

inlinevirtual

Definition at line 259 of file Integrator.h.

◆ solverStats()

virtual AnyMap solverStats ( ) const

inlinevirtual

Get solver stats from integrator.

Reimplemented in CVodesIntegrator, and IdasIntegrator.

Definition at line 265 of file Integrator.h.

◆ maxNonlinIterations()

virtual int maxNonlinIterations ( ) const

inlinevirtual

Definition at line 271 of file Integrator.h.

◆ setMaxNonlinIterations()

virtual void setMaxNonlinIterations ( int n )

inlinevirtual

Definition at line 275 of file Integrator.h.

◆ maxNonlinConvFailures()

virtual int maxNonlinConvFailures ( ) const

inlinevirtual

Definition at line 279 of file Integrator.h.

◆ setMaxNonlinConvFailures()

virtual void setMaxNonlinConvFailures ( int n )

inlinevirtual

Definition at line 283 of file Integrator.h.

◆ algebraicInErrorTest()

virtual bool algebraicInErrorTest ( ) const

inlinevirtual

Definition at line 287 of file Integrator.h.

◆ includeAlgebraicInErrorTest()

virtual void includeAlgebraicInErrorTest ( bool yesno )

inlinevirtual

Definition at line 291 of file Integrator.h.

◆ warn()

void warn ( const string & msg ) const

inlineprivate

Definition at line 306 of file Integrator.h.

Member Data Documentation

◆ m_preconditioner

shared_ptr<PreconditionerBase> m_preconditioner

protected

Pointer to preconditioner object used in integration which is set by setPreconditioner and initialized inside of ReactorNet::initialize()

Definition at line 299 of file Integrator.h.

◆ m_prec_side

PreconditionerSide m_prec_side = PreconditionerSide::NO_PRECONDITION

protected

Type of preconditioning used in applyOptions.

Definition at line 301 of file Integrator.h.

◆ m_dummy

double m_dummy

private

Definition at line 305 of file Integrator.h.

The documentation for this class was generated from the following file:

Integrator.h

Detailed Description

Public Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Constructor & Destructor Documentation

◆ Integrator()

◆ ~Integrator()

Member Function Documentation

◆ setTolerances() [1/2]

◆ setTolerances() [2/2]

◆ setSensitivityTolerances()

◆ setLinearSolverType()

◆ setPreconditioner()

◆ preconditionerSolve()

◆ preconditionerSide()

◆ preconditioner()

◆ linearSolverType()

◆ initialize()

◆ reinitialize()

◆ integrate()

◆ step()

◆ solution() [1/2]

◆ solution() [2/2]

◆ derivative()

◆ lastOrder()

◆ nEquations()

◆ nEvals()

◆ maxOrder()

◆ setMaxOrder()

◆ setMethod()

◆ setMaxStepSize()

◆ setMinStepSize()

◆ setMaxErrTestFails()

◆ setMaxSteps()

◆ maxSteps()

◆ setBandwidth()

◆ nSensParams()

◆ sensitivity()

◆ solverStats()

◆ maxNonlinIterations()

◆ setMaxNonlinIterations()

◆ maxNonlinConvFailures()

◆ setMaxNonlinConvFailures()

◆ algebraicInErrorTest()

◆ includeAlgebraicInErrorTest()

◆ warn()

Member Data Documentation

◆ m_preconditioner

◆ m_prec_side

◆ m_dummy