Sim1D.h

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/**
 * @file Sim1D.h
 */
 
// This file is part of Cantera. See License.txt in the top-level directory or
// at https://cantera.org/license.txt for license and copyright information.
 
#ifndef CT_SIM1D_H
#define CT_SIM1D_H
 
#include "OneDim.h"
 
namespace Cantera
{
 
/**
 * One-dimensional simulations. Class Sim1D extends class OneDim by storing
 * the solution vector, and by adding a hybrid Newton/time-stepping solver.
 * @ingroup onedGroup
 */
class Sim1D : public OneDim
{
public:
    //! Default constructor.
    /*!
     * This constructor is provided to make the class default-constructible, but
     * is not meant to be used in most applications.  Use the next constructor
     */
    Sim1D() {}
 
    /**
     * Standard constructor.
     * @param domains A vector of shared pointers to the domains to be linked together.
     *     The domain pointers must be entered in left-to-right order --- that is,
     *     the pointer to the leftmost domain is domain[0], the pointer to the
     *     domain to its right is domain[1], etc.
     */
    Sim1D(vector<shared_ptr<Domain1D>>& domains);
 
    //! @deprecated To be removed after %Cantera 3.0;
    //!     superseded by Sim1D() using shared_ptr
    Sim1D(vector<Domain1D*>& domains);
 
    //! @name Setting initial values
    //!
    //! These methods are used to set the initial values of solution components.
    //! @{
 
    //! Set initial guess for one component for all domains
    /**
     * @param component component name
     * @param locs A vector of relative positions, beginning with 0.0 at the
     *     left of the domain, and ending with 1.0 at the right of the domain.
     * @param vals A vector of values corresponding to the relative position
     *     locations.
     */
    void setInitialGuess(const string& component, vector<double>& locs,
                         vector<double>& vals);
 
    /**
     * Set a single value in the solution vector.
     * @param dom domain number, beginning with 0 for the leftmost domain.
     * @param comp component number
     * @param localPoint grid point within the domain, beginning with 0 for
     *     the leftmost grid point in the domain.
     * @param value the value.
     */
    void setValue(size_t dom, size_t comp, size_t localPoint, double value);
 
    /**
     * Get one entry in the solution vector.
     * @param dom domain number, beginning with 0 for the leftmost domain.
     * @param comp component number
     * @param localPoint grid point within the domain, beginning with 0 for
     *     the leftmost grid point in the domain.
     */
    double value(size_t dom, size_t comp, size_t localPoint) const;
 
    double workValue(size_t dom, size_t comp, size_t localPoint) const;
 
    /**
     * Specify a profile for one component of one domain.
     * @param dom domain number, beginning with 0 for the leftmost domain.
     * @param comp component number
     * @param pos A vector of relative positions, beginning with 0.0 at the
     *     left of the domain, and ending with 1.0 at the right of the domain.
     * @param values A vector of values corresponding to the relative position
     *     locations.
     *
     * Note that the vector pos and values can have lengths different than the
     * number of grid points, but their lengths must be equal. The values at
     * the grid points will be linearly interpolated based on the (pos,
     * values) specification.
     */
    void setProfile(size_t dom, size_t comp, const vector<double>& pos,
                    const vector<double>& values);
 
    //! Set component 'comp' of domain 'dom' to value 'v' at all points.
    void setFlatProfile(size_t dom, size_t comp, double v);
 
    //! @}
 
    //! @name Logging, saving and restoring of solutions
    //!
    //! @{
 
    /**
     * Output information on current solution for all domains to stream.
     * @param s  Output stream
     * @deprecated To be removed after %Cantera 3.0; replaced by show()
     */
    void showSolution(std::ostream& s);
 
    /**
     * Show logging information on current solution for all domains.
     * @deprecated To be removed after %Cantera 3.0; replaced by show()
     */
    void showSolution();
 
    /**
     * Output information on current solution for all domains to stream.
     * @param s  Output stream
     * @since New in %Cantera 3.0.
     */
    void show(std::ostream& s);
 
    /**
     * Show logging information on current solution for all domains.
     * @since New in %Cantera 3.0.
     */
    void show();
 
    /**
     * Save the current solution to a container file.
     * @param fname  Name of output container file
     * @param id  Identifier of solution within the container file
     * @param desc  Description of the solution
     * @param loglevel  Level of diagnostic output
     * @deprecated To be removed after %Cantera 3.0; loglevel is deprecated.
     */
    void save(const string& fname, const string& id, const string& desc, int loglevel);
 
    /**
     * Save current simulation data to a container file or CSV format.
     *
     * In order to save the content of a Sim1D object, individual domains are
     * converted to SolutionArray objects and saved using the SolutionArray::save()
     * method. For HDF and YAML output, all domains are written to a single container
     * file with shared header information. Simulation settings of individual domains
     * are preserved as meta data of the corresponding SolutionArray objects.
     * For CSV files, only state and auxiliary data of the main 1D domain are saved.
     *
     * The complete state of the current object can be restored from HDF and YAML
     * container files using the restore() method, while individual domains can be
     * loaded using SolutionArray::restore() for further analysis. While CSV do not
     * contain complete information, they can still be used for setting initial states
     * of individual simulation objects for some %Cantera API's.
     *
     * @param fname  Name of output file (CSV, YAML or HDF)
     * @param name  Identifier of storage location within the container file; this
     *      node/group contains header information and multiple subgroups holding
     *      domain-specific SolutionArray data (YAML/HDF only)
     * @param desc  Custom comment describing the dataset to be stored (YAML/HDF only)
     * @param overwrite  Force overwrite if file/name exists; optional (default=false)
     * @param compression  Compression level (0-9); optional (default=0; HDF only)
     * @param basis  Output mass ("Y"/"mass") or mole ("X"/"mole") fractions;
     *      if not specified (default=""), the native basis of the underlying
     *      ThermoPhase manager is used - @see nativeState (CSV only)
     */
    void save(const string& fname, const string& name, const string& desc,
              bool overwrite=false, int compression=0, const string& basis="");
 
    /**
     * Save the residual of the current solution to a container file.
     * @param fname  Name of output container file
     * @param id  Identifier of solution within the container file
     * @param desc  Description of the solution
     * @param loglevel  Level of diagnostic output
     * @deprecated To be removed after %Cantera 3.0; loglevel is deprecated.
     */
    void saveResidual(const string& fname, const string& id,
                      const string& desc, int loglevel);
 
    /**
     * Save the residual of the current solution to a container file.
     * @param fname  Name of output container file
     * @param name  Identifier of solution within the container file
     * @param desc  Description of the solution
     * @param overwrite  Force overwrite if name exists; optional (default=false)
     * @param compression  Compression level (optional; HDF only)
     */
    void saveResidual(const string& fname, const string& name,
                      const string& desc, bool overwrite=false, int compression=0);
 
    /**
     * Initialize the solution with a previously-saved solution.
     * @param fname  Name of container file
     * @param id  Identifier of solution within the container file
     * @param loglevel  Level of diagnostic output
     * @deprecated To be removed after %Cantera 3.0; loglevel is deprecated.
     * @return  AnyMap containing header information
     */
    AnyMap restore(const string& fname, const string& id, int loglevel);
 
    /**
     * Retrieve data and settings from a previously saved simulation.
     *
     * This method restores a simulation object from YAML or HDF data previously saved
     * using the save() method.
     *
     * @param fname  Name of container file (YAML or HDF)
     * @param name  Identifier of location within the container file; this node/group
     *      contains header information and subgroups with domain-specific SolutionArray
     *      data
     * @return  AnyMap containing header information
     */
    AnyMap restore(const string& fname, const string& name);
 
    //! @}
 
    //! @deprecated To be removed after %Cantera 3.0 (unused)
    const double* solution() {
        warn_deprecated("Sim1D::solution",
            "This method is unused and will be removed after Cantera 3.0.");
        return m_state->data();
    }
 
    void setTimeStep(double stepsize, size_t n, const int* tsteps);
 
    void solve(int loglevel = 0, bool refine_grid = true);
 
    void eval(double rdt=-1.0, int count = 1) {
        OneDim::eval(npos, m_state->data(), m_xnew.data(), rdt, count);
    }
 
    // Evaluate the governing equations and return the vector of residuals
    void getResidual(double rdt, double* resid) {
        OneDim::eval(npos, m_state->data(), resid, rdt, 0);
    }
 
    //! Refine the grid in all domains.
    int refine(int loglevel=0);
 
    //! Add node for fixed temperature point of freely propagating flame
    int setFixedTemperature(double t);
 
    //! Return temperature at the point used to fix the flame location
    double fixedTemperature();
 
    //! Return location of the point where temperature is fixed
    double fixedTemperatureLocation();
 
    /**
     * Set grid refinement criteria. If dom >= 0, then the settings
     * apply only to the specified domain.  If dom < 0, the settings
     * are applied to each domain.  @see Refiner::setCriteria.
     */
    void setRefineCriteria(int dom = -1, double ratio = 10.0,
                           double slope = 0.8, double curve = 0.8,
                           double prune = -0.1);
 
    /**
     * Get the grid refinement criteria. dom must be greater than
     * or equal to zero (that is, the domain must be specified).
     * @see Refiner::getCriteria
     */
    vector<double> getRefineCriteria(int dom);
 
    /**
     * Set the maximum number of grid points in the domain. If dom >= 0,
     * then the settings apply only to the specified domain. If dom < 0,
     * the settings are applied to each domain.  @see Refiner::setMaxPoints.
     */
    void setMaxGridPoints(int dom, int npoints);
 
    /**
     * Get the maximum number of grid points in this domain. @see Refiner::maxPoints
     *
     * @param dom domain number, beginning with 0 for the leftmost domain.
     */
    size_t maxGridPoints(size_t dom);
 
    //! Set the minimum grid spacing in the specified domain(s).
    /*!
     * @param dom Domain index. If dom == -1, the specified spacing is applied
     *            to all domains.
     * @param gridmin The minimum allowable grid spacing [m]
     */
    void setGridMin(int dom, double gridmin);
 
    //! Set the current solution vector to the last successful time-stepping
    //! solution. This can be used to examine the solver progress after a failed
    //! integration.
    void restoreTimeSteppingSolution();
 
    //! Set the current solution vector and grid to the last successful steady-
    //! state solution. This can be used to examine the solver progress after a
    //! failure during grid refinement.
    void restoreSteadySolution();
 
    void getInitialSoln();
 
    //! @deprecated To be removed after %Cantera 3.0 (unused)
    void setSolution(const double* soln) {
        warn_deprecated("Sim1D::setSolution",
            "This method is unused and will be removed after Cantera 3.0.");
        std::copy(soln, soln + m_state->size(), m_state->data());
    }
 
    //! @deprecated To be removed after %Cantera 3.0 (unused)
    const double* solution() const {
        warn_deprecated("Sim1D::solution",
            "This method is unused and will be removed after Cantera 3.0.");
        return m_state->data();
    }
 
    double jacobian(int i, int j);
 
    void evalSSJacobian();
 
    //! Solve the equation @f$ J^T \lambda = b @f$.
    /**
     * Here, @f$ J = \partial f/\partial x @f$ is the Jacobian matrix of the
     * system of equations @f$ f(x,p)=0 @f$. This can be used to efficiently
     * solve for the sensitivities of a scalar objective function @f$ g(x,p) @f$
     * to a vector of parameters @f$ p @f$ by solving:
     * @f[ J^T \lambda = \left( \frac{\partial g}{\partial x} \right)^T @f]
     * for @f$ \lambda @f$ and then computing:
     * @f[
     *     \left.\frac{dg}{dp}\right|_{f=0} = \frac{\partial g}{\partial p}
     *         - \lambda^T \frac{\partial f}{\partial p}
     * @f]
     */
    void solveAdjoint(const double* b, double* lambda);
 
    void resize() override;
 
    //! Set a function that will be called after each successful steady-state
    //! solve, before regridding. Intended to be used for observing solver
    //! progress for debugging purposes.
    void setSteadyCallback(Func1* callback) {
        m_steady_callback = callback;
    }
 
protected:
    //! the solution vector after the last successful timestepping
    vector<double> m_xlast_ts;
 
    //! the solution vector after the last successful steady-state solve (stored
    //! before grid refinement)
    vector<double> m_xlast_ss;
 
    //! the grids for each domain after the last successful steady-state solve
    //! (stored before grid refinement)
    vector<vector<double>> m_grid_last_ss;
 
    //! a work array used to hold the residual or the new solution
    vector<double> m_xnew;
 
    //! timestep
    double m_tstep;
 
    //! array of number of steps to take before re-attempting the steady-state
    //! solution
    vector<int> m_steps;
 
    //! User-supplied function called after a successful steady-state solve.
    Func1* m_steady_callback;
 
private:
    //! Calls method _finalize in each domain.
    void finalize();
 
    //! Wrapper around the Newton solver
    /*!
     * @return 0 if successful, -1 on failure
     */
    int newtonSolve(int loglevel);
};
 
}
#endif