A phase that is comprised of a fixed additive combination of other lattice phases. More...

#include <LatticeSolidPhase.h>

Inheritance diagram for LatticeSolidPhase:

Collaboration diagram for LatticeSolidPhase:

Public Member Functions
	LatticeSolidPhase ()
	Base empty constructor. More...

virtual std::string	type () const
	String indicating the thermodynamic model implemented. More...

virtual std::string	phaseOfMatter () const
	String indicating the mechanical phase of the matter in this Phase. More...

virtual bool	isCompressible () const
	Return whether phase represents a compressible substance. More...

std::map< std::string, size_t >	nativeState () const
	Return a map of properties defining the native state of a substance. More...

virtual doublereal	minTemp (size_t k=npos) const
	Minimum temperature for which the thermodynamic data for the species or phase are valid. More...

virtual doublereal	maxTemp (size_t k=npos) const
	Maximum temperature for which the thermodynamic data for the species are valid. More...

virtual doublereal	refPressure () const
	Returns the reference pressure in Pa. More...

virtual int	standardStateConvention () const
	This method returns the convention used in specification of the standard state, of which there are currently two, temperature based, and variable pressure based. More...

virtual doublereal	enthalpy_mole () const
	Return the Molar Enthalpy. Units: J/kmol. More...

virtual doublereal	intEnergy_mole () const
	Return the Molar Internal Energy. Units: J/kmol. More...

virtual doublereal	entropy_mole () const
	Return the Molar Entropy. Units: J/kmol/K. More...

virtual doublereal	gibbs_mole () const
	Return the Molar Gibbs energy. Units: J/kmol. More...

virtual doublereal	cp_mole () const
	Return the constant pressure heat capacity. Units: J/kmol/K. More...

virtual doublereal	cv_mole () const
	Return the constant volume heat capacity. Units: J/kmol/K. More...

virtual doublereal	pressure () const
	Report the Pressure. Units: Pa. More...

virtual void	setPressure (doublereal p)
	Set the pressure at constant temperature. Units: Pa. More...

doublereal	calcDensity ()
	Calculate the density of the solid mixture. More...

virtual void	setMoleFractions (const doublereal *const x)
	Set the mole fractions to the specified values, and then normalize them so that they sum to 1.0 for each of the subphases. More...

virtual void	getMoleFractions (doublereal *const x) const
	Get the species mole fraction vector. More...

virtual doublereal	moleFraction (const int k) const

virtual void	getMassFractions (doublereal *const y) const

virtual doublereal	massFraction (const int k) const

virtual void	setMassFractions (const doublereal *const y)
	Set the mass fractions to the specified values and normalize them. More...

virtual void	setMassFractions_NoNorm (const doublereal *const y)
	Set the mass fractions to the specified values without normalizing. More...

virtual void	getConcentrations (doublereal *const c) const

virtual doublereal	concentration (int k) const

virtual void	setConcentrations (const doublereal *const conc)
	Set the concentrations to the specified values within the phase. More...

virtual Units	standardConcentrationUnits () const
	Returns the units of the "standard concentration" for this phase. More...

virtual void	getActivityConcentrations (doublereal *c) const
	This method returns an array of generalized concentrations. More...

virtual void	getActivityCoefficients (doublereal *ac) const
	Get the array of non-dimensional molar-based activity coefficients at the current solution temperature, pressure, and solution concentration. More...

virtual void	getChemPotentials (doublereal *mu) const
	Get the species chemical potentials. Units: J/kmol. More...

virtual void	getPartialMolarEnthalpies (doublereal *hbar) const
	Returns an array of partial molar enthalpies for the species in the mixture. More...

virtual void	getPartialMolarEntropies (doublereal *sbar) const
	Returns an array of partial molar entropies of the species in the solution. More...

virtual void	getPartialMolarCp (doublereal *cpbar) const
	Returns an array of partial molar Heat Capacities at constant pressure of the species in the solution. More...

virtual void	getPartialMolarVolumes (doublereal *vbar) const
	returns an array of partial molar volumes of the species in the solution. More...

virtual void	getStandardChemPotentials (doublereal *mu0) const
	Get the array of standard state chemical potentials at unit activity for the species at their standard states at the current T and P of the solution. More...

virtual doublereal	standardConcentration (size_t k=0) const
	Return the standard concentration for the kth species. More...

virtual doublereal	logStandardConc (size_t k=0) const
	Natural logarithm of the standard concentration of the kth species. More...

virtual bool	addSpecies (shared_ptr< Species > spec)

void	addLattice (shared_ptr< ThermoPhase > lattice)
	Add a lattice to this phase. More...

void	setLatticeStoichiometry (const compositionMap &comp)
	Set the lattice stoichiometric coefficients, \( \theta_i \). More...

virtual void	setParameters (const AnyMap &phaseNode, const AnyMap &rootNode=AnyMap())
	Set equation of state parameters from an AnyMap phase description. More...

virtual void	initThermo ()
	Initialize the ThermoPhase object after all species have been set up. More...

virtual void	getParameters (AnyMap &phaseNode) const
	Store the parameters of a ThermoPhase object such that an identical one could be reconstructed using the newPhase(AnyMap&) function. More...

virtual void	getSpeciesParameters (const std::string &name, AnyMap &speciesNode) const
	Get phase-specific parameters of a Species object such that an identical one could be reconstructed and added to this phase. More...

virtual void	setParametersFromXML (const XML_Node &eosdata)
	Set equation of state parameter values from XML entries. More...

void	setLatticeMoleFractionsByName (int n, const std::string &x)
	Set the Lattice mole fractions using a string. More...

virtual void	modifyOneHf298SS (const size_t k, const doublereal Hf298New)
	Modify the value of the 298 K Heat of Formation of one species in the phase (J kmol-1) More...

virtual void	resetHf298 (const size_t k=npos)
	Restore the original heat of formation of one or more species. More...

Thermodynamic Values for the Species Reference States
virtual void	getGibbs_RT_ref (doublereal *grt) const
	Returns the vector of nondimensional Gibbs Free Energies of the reference state at the current temperature of the solution and the reference pressure for the species. More...

virtual void	getGibbs_ref (doublereal *g) const
	Returns the vector of the Gibbs function of the reference state at the current temperature of the solution and the reference pressure for the species. More...

Public Member Functions inherited from ThermoPhase
	ThermoPhase ()
	Constructor. More...

doublereal	RT () const
	Return the Gas Constant multiplied by the current temperature. More...

double	equivalenceRatio () const
	Compute the equivalence ratio for the current mixture from available oxygen and required oxygen. More...

virtual bool	isIdeal () const
	Boolean indicating whether phase is ideal. More...

doublereal	Hf298SS (const size_t k) const
	Report the 298 K Heat of Formation of the standard state of one species (J kmol-1) More...

bool	chargeNeutralityNecessary () const
	Returns the chargeNeutralityNecessity boolean. More...

virtual doublereal	isothermalCompressibility () const
	Returns the isothermal compressibility. Units: 1/Pa. More...

virtual doublereal	thermalExpansionCoeff () const
	Return the volumetric thermal expansion coefficient. Units: 1/K. More...

void	setElectricPotential (doublereal v)
	Set the electric potential of this phase (V). More...

doublereal	electricPotential () const
	Returns the electric potential of this phase (V). More...

virtual int	activityConvention () const
	This method returns the convention used in specification of the activities, of which there are currently two, molar- and molality-based conventions. More...

virtual void	getActivities (doublereal *a) const
	Get the array of non-dimensional activities at the current solution temperature, pressure, and solution concentration. More...

virtual void	getLnActivityCoefficients (doublereal *lnac) const
	Get the array of non-dimensional molar-based ln activity coefficients at the current solution temperature, pressure, and solution concentration. More...

virtual void	getChemPotentials_RT (doublereal *mu) const
	Get the array of non-dimensional species chemical potentials These are partial molar Gibbs free energies. More...

void	getElectrochemPotentials (doublereal *mu) const
	Get the species electrochemical potentials. More...

virtual void	getPartialMolarIntEnergies (doublereal *ubar) const
	Return an array of partial molar internal energies for the species in the mixture. More...

virtual void	getEnthalpy_RT (doublereal *hrt) const
	Get the nondimensional Enthalpy functions for the species at their standard states at the current T and P of the solution. More...

virtual void	getEntropy_R (doublereal *sr) const
	Get the array of nondimensional Entropy functions for the standard state species at the current T and P of the solution. More...

virtual void	getGibbs_RT (doublereal *grt) const
	Get the nondimensional Gibbs functions for the species in their standard states at the current T and P of the solution. More...

virtual void	getPureGibbs (doublereal *gpure) const
	Get the Gibbs functions for the standard state of the species at the current T and P of the solution. More...

virtual void	getIntEnergy_RT (doublereal *urt) const
	Returns the vector of nondimensional Internal Energies of the standard state species at the current T and P of the solution. More...

virtual void	getCp_R (doublereal *cpr) const
	Get the nondimensional Heat Capacities at constant pressure for the species standard states at the current T and P of the solution. More...

virtual void	getStandardVolumes (doublereal *vol) const
	Get the molar volumes of the species standard states at the current T and P of the solution. More...

virtual void	getEnthalpy_RT_ref (doublereal *hrt) const
	Returns the vector of nondimensional enthalpies of the reference state at the current temperature of the solution and the reference pressure for the species. More...

virtual void	getEntropy_R_ref (doublereal *er) const
	Returns the vector of nondimensional entropies of the reference state at the current temperature of the solution and the reference pressure for each species. More...

virtual void	getIntEnergy_RT_ref (doublereal *urt) const
	Returns the vector of nondimensional internal Energies of the reference state at the current temperature of the solution and the reference pressure for each species. More...

virtual void	getCp_R_ref (doublereal *cprt) const
	Returns the vector of nondimensional constant pressure heat capacities of the reference state at the current temperature of the solution and reference pressure for each species. More...

virtual void	getStandardVolumes_ref (doublereal *vol) const
	Get the molar volumes of the species reference states at the current T and P_ref of the solution. More...

doublereal	enthalpy_mass () const
	Specific enthalpy. Units: J/kg. More...

doublereal	intEnergy_mass () const
	Specific internal energy. Units: J/kg. More...

doublereal	entropy_mass () const
	Specific entropy. Units: J/kg/K. More...

doublereal	gibbs_mass () const
	Specific Gibbs function. Units: J/kg. More...

doublereal	cp_mass () const
	Specific heat at constant pressure. Units: J/kg/K. More...

doublereal	cv_mass () const
	Specific heat at constant volume. Units: J/kg/K. More...

virtual void	setState_TPX (doublereal t, doublereal p, const doublereal *x)
	Set the temperature (K), pressure (Pa), and mole fractions. More...

virtual void	setState_TPX (doublereal t, doublereal p, const compositionMap &x)
	Set the temperature (K), pressure (Pa), and mole fractions. More...

virtual void	setState_TPX (doublereal t, doublereal p, const std::string &x)
	Set the temperature (K), pressure (Pa), and mole fractions. More...

virtual void	setState_TPY (doublereal t, doublereal p, const doublereal *y)
	Set the internally stored temperature (K), pressure (Pa), and mass fractions of the phase. More...

virtual void	setState_TPY (doublereal t, doublereal p, const compositionMap &y)
	Set the internally stored temperature (K), pressure (Pa), and mass fractions of the phase. More...

virtual void	setState_TPY (doublereal t, doublereal p, const std::string &y)
	Set the internally stored temperature (K), pressure (Pa), and mass fractions of the phase. More...

virtual void	setState_TP (doublereal t, doublereal p)
	Set the temperature (K) and pressure (Pa) More...

virtual void	setState_PX (doublereal p, doublereal *x)
	Set the pressure (Pa) and mole fractions. More...

virtual void	setState_PY (doublereal p, doublereal *y)
	Set the internally stored pressure (Pa) and mass fractions. More...

virtual void	setState_HP (double h, double p, double tol=1e-9)
	Set the internally stored specific enthalpy (J/kg) and pressure (Pa) of the phase. More...

virtual void	setState_UV (double u, double v, double tol=1e-9)
	Set the specific internal energy (J/kg) and specific volume (m^3/kg). More...

virtual void	setState_SP (double s, double p, double tol=1e-9)
	Set the specific entropy (J/kg/K) and pressure (Pa). More...

virtual void	setState_SV (double s, double v, double tol=1e-9)
	Set the specific entropy (J/kg/K) and specific volume (m^3/kg). More...

virtual void	setState_ST (double s, double t, double tol=1e-9)
	Set the specific entropy (J/kg/K) and temperature (K). More...

virtual void	setState_TV (double t, double v, double tol=1e-9)
	Set the temperature (K) and specific volume (m^3/kg). More...

virtual void	setState_PV (double p, double v, double tol=1e-9)
	Set the pressure (Pa) and specific volume (m^3/kg). More...

virtual void	setState_UP (double u, double p, double tol=1e-9)
	Set the specific internal energy (J/kg) and pressure (Pa). More...

virtual void	setState_VH (double v, double h, double tol=1e-9)
	Set the specific volume (m^3/kg) and the specific enthalpy (J/kg) More...

virtual void	setState_TH (double t, double h, double tol=1e-9)
	Set the temperature (K) and the specific enthalpy (J/kg) More...

virtual void	setState_SH (double s, double h, double tol=1e-9)
	Set the specific entropy (J/kg/K) and the specific enthalpy (J/kg) More...

virtual void	setState_RP (doublereal rho, doublereal p)
	Set the density (kg/m**3) and pressure (Pa) at constant composition. More...

virtual void	setState_RPX (doublereal rho, doublereal p, const doublereal *x)
	Set the density (kg/m**3), pressure (Pa) and mole fractions. More...

virtual void	setState_RPX (doublereal rho, doublereal p, const compositionMap &x)
	Set the density (kg/m**3), pressure (Pa) and mole fractions. More...

virtual void	setState_RPX (doublereal rho, doublereal p, const std::string &x)
	Set the density (kg/m**3), pressure (Pa) and mole fractions. More...

virtual void	setState_RPY (doublereal rho, doublereal p, const doublereal *y)
	Set the density (kg/m**3), pressure (Pa) and mass fractions. More...

virtual void	setState_RPY (doublereal rho, doublereal p, const compositionMap &y)
	Set the density (kg/m**3), pressure (Pa) and mass fractions. More...

virtual void	setState_RPY (doublereal rho, doublereal p, const std::string &y)
	Set the density (kg/m**3), pressure (Pa) and mass fractions. More...

virtual void	setState (const AnyMap &state)
	Set the state using an AnyMap containing any combination of properties supported by the thermodynamic model. More...

void	setMixtureFraction (double mixFrac, const double fuelComp, const double oxComp, ThermoBasis basis=ThermoBasis::molar)
	Set the mixture composition according to the mixture fraction = kg fuel / (kg oxidizer + kg fuel) More...

void	setMixtureFraction (double mixFrac, const std::string &fuelComp, const std::string &oxComp, ThermoBasis basis=ThermoBasis::molar)
	Set the mixture composition according to the mixture fraction = kg fuel / (kg oxidizer + kg fuel) More...

void	setMixtureFraction (double mixFrac, const compositionMap &fuelComp, const compositionMap &oxComp, ThermoBasis basis=ThermoBasis::molar)
	Set the mixture composition according to the mixture fraction = kg fuel / (kg oxidizer + kg fuel) More...

double	mixtureFraction (const double fuelComp, const double oxComp, ThermoBasis basis=ThermoBasis::molar, const std::string &element="Bilger") const
	Compute the mixture fraction = kg fuel / (kg oxidizer + kg fuel) for the current mixture given fuel and oxidizer compositions. More...

double	mixtureFraction (const std::string &fuelComp, const std::string &oxComp, ThermoBasis basis=ThermoBasis::molar, const std::string &element="Bilger") const
	Compute the mixture fraction = kg fuel / (kg oxidizer + kg fuel) for the current mixture given fuel and oxidizer compositions. More...

double	mixtureFraction (const compositionMap &fuelComp, const compositionMap &oxComp, ThermoBasis basis=ThermoBasis::molar, const std::string &element="Bilger") const
	Compute the mixture fraction = kg fuel / (kg oxidizer + kg fuel) for the current mixture given fuel and oxidizer compositions. More...

void	setEquivalenceRatio (double phi, const double fuelComp, const double oxComp, ThermoBasis basis=ThermoBasis::molar)
	Set the mixture composition according to the equivalence ratio. More...

void	setEquivalenceRatio (double phi, const std::string &fuelComp, const std::string &oxComp, ThermoBasis basis=ThermoBasis::molar)
	Set the mixture composition according to the equivalence ratio. More...

void	setEquivalenceRatio (double phi, const compositionMap &fuelComp, const compositionMap &oxComp, ThermoBasis basis=ThermoBasis::molar)
	Set the mixture composition according to the equivalence ratio. More...

double	equivalenceRatio (const double fuelComp, const double oxComp, ThermoBasis basis=ThermoBasis::molar) const
	Compute the equivalence ratio for the current mixture given the compositions of fuel and oxidizer. More...

double	equivalenceRatio (const std::string &fuelComp, const std::string &oxComp, ThermoBasis basis=ThermoBasis::molar) const
	Compute the equivalence ratio for the current mixture given the compositions of fuel and oxidizer. More...

double	equivalenceRatio (const compositionMap &fuelComp, const compositionMap &oxComp, ThermoBasis basis=ThermoBasis::molar) const
	Compute the equivalence ratio for the current mixture given the compositions of fuel and oxidizer. More...

double	stoichAirFuelRatio (const double fuelComp, const double oxComp, ThermoBasis basis=ThermoBasis::molar) const
	Compute the stoichiometric air to fuel ratio (kg oxidizer / kg fuel) given fuel and oxidizer compositions. More...

double	stoichAirFuelRatio (const std::string &fuelComp, const std::string &oxComp, ThermoBasis basis=ThermoBasis::molar) const
	Compute the stoichiometric air to fuel ratio (kg oxidizer / kg fuel) given fuel and oxidizer compositions. More...

double	stoichAirFuelRatio (const compositionMap &fuelComp, const compositionMap &oxComp, ThermoBasis basis=ThermoBasis::molar) const
	Compute the stoichiometric air to fuel ratio (kg oxidizer / kg fuel) given fuel and oxidizer compositions. More...

void	equilibrate (const std::string &XY, const std::string &solver="auto", double rtol=1e-9, int max_steps=50000, int max_iter=100, int estimate_equil=0, int log_level=0)
	Equilibrate a ThermoPhase object. More...

virtual void	setToEquilState (const doublereal *mu_RT)
	This method is used by the ChemEquil equilibrium solver. More...

virtual bool	compatibleWithMultiPhase () const
	Indicates whether this phase type can be used with class MultiPhase for equilibrium calculations. More...

virtual doublereal	critTemperature () const
	Critical temperature (K). More...

virtual doublereal	critPressure () const
	Critical pressure (Pa). More...

virtual doublereal	critVolume () const
	Critical volume (m3/kmol). More...

virtual doublereal	critCompressibility () const
	Critical compressibility (unitless). More...

virtual doublereal	critDensity () const
	Critical density (kg/m3). More...

virtual doublereal	satTemperature (doublereal p) const
	Return the saturation temperature given the pressure. More...

virtual doublereal	satPressure (doublereal t)
	Return the saturation pressure given the temperature. More...

virtual doublereal	vaporFraction () const
	Return the fraction of vapor at the current conditions. More...

virtual void	setState_Tsat (doublereal t, doublereal x)
	Set the state to a saturated system at a particular temperature. More...

virtual void	setState_Psat (doublereal p, doublereal x)
	Set the state to a saturated system at a particular pressure. More...

void	setState_TPQ (double T, double P, double Q)
	Set the temperature, pressure, and vapor fraction (quality). More...

virtual void	modifySpecies (size_t k, shared_ptr< Species > spec)
	Modify the thermodynamic data associated with a species. More...

void	saveSpeciesData (const size_t k, const XML_Node *const data)
	Store a reference pointer to the XML tree containing the species data for this phase. More...

const std::vector< const XML_Node * > &	speciesData () const
	Return a pointer to the vector of XML nodes containing the species data for this phase. More...

virtual MultiSpeciesThermo &	speciesThermo (int k=-1)
	Return a changeable reference to the calculation manager for species reference-state thermodynamic properties. More...

virtual const MultiSpeciesThermo &	speciesThermo (int k=-1) const

void	initThermoFile (const std::string &inputFile, const std::string &id)

virtual void	initThermoXML (XML_Node &phaseNode, const std::string &id)
	Import and initialize a ThermoPhase object using an XML tree. More...

virtual void	setParameters (int n, doublereal *const c)
	Set the equation of state parameters. More...

virtual void	getParameters (int &n, doublereal *const c) const
	Get the equation of state parameters in a vector. More...

AnyMap	parameters (bool withInput=true) const
	Returns the parameters of a ThermoPhase object such that an identical one could be reconstructed using the newPhase(AnyMap&) function. More...

const AnyMap &	input () const
	Access input data associated with the phase description. More...

AnyMap &	input ()

virtual void	setStateFromXML (const XML_Node &state)
	Set the initial state of the phase to the conditions specified in the state XML element. More...

virtual void	invalidateCache ()
	Invalidate any cached values which are normally updated only when a change in state is detected. More...

virtual void	getdlnActCoeffds (const doublereal dTds, const doublereal const dXds, doublereal dlnActCoeffds) const
	Get the change in activity coefficients wrt changes in state (temp, mole fraction, etc) along a line in parameter space or along a line in physical space. More...

virtual void	getdlnActCoeffdlnX_diag (doublereal *dlnActCoeffdlnX_diag) const
	Get the array of ln mole fraction derivatives of the log activity coefficients - diagonal component only. More...

virtual void	getdlnActCoeffdlnN_diag (doublereal *dlnActCoeffdlnN_diag) const
	Get the array of log species mole number derivatives of the log activity coefficients. More...

virtual void	getdlnActCoeffdlnN (const size_t ld, doublereal *const dlnActCoeffdlnN)
	Get the array of derivatives of the log activity coefficients with respect to the log of the species mole numbers. More...

virtual void	getdlnActCoeffdlnN_numderiv (const size_t ld, doublereal *const dlnActCoeffdlnN)

virtual std::string	report (bool show_thermo=true, doublereal threshold=-1e-14) const
	returns a summary of the state of the phase as a string More...

virtual void	reportCSV (std::ofstream &csvFile) const
	returns a summary of the state of the phase to a comma separated file. More...

Public Member Functions inherited from Phase
	Phase ()
	Default constructor. More...

	Phase (const Phase &)=delete

Phase &	operator= (const Phase &)=delete

XML_Node &	xml () const
	Returns a const reference to the XML_Node that describes the phase. More...

void	setXMLdata (XML_Node &xmlPhase)
	Stores the XML tree information for the current phase. More...

virtual bool	isPure () const
	Return whether phase represents a pure (single species) substance. More...

virtual bool	hasPhaseTransition () const
	Return whether phase represents a substance with phase transitions. More...

virtual std::vector< std::string >	fullStates () const
	Return a vector containing full states defining a phase. More...

virtual std::vector< std::string >	partialStates () const
	Return a vector of settable partial property sets within a phase. More...

virtual size_t	stateSize () const
	Return size of vector defining internal state of the phase. More...

void	saveState (vector_fp &state) const
	Save the current internal state of the phase. More...

virtual void	saveState (size_t lenstate, doublereal *state) const
	Write to array 'state' the current internal state. More...

void	restoreState (const vector_fp &state)
	Restore a state saved on a previous call to saveState. More...

virtual void	restoreState (size_t lenstate, const doublereal *state)
	Restore the state of the phase from a previously saved state vector. More...

doublereal	molecularWeight (size_t k) const
	Molecular weight of species `k`. More...

void	getMolecularWeights (vector_fp &weights) const
	Copy the vector of molecular weights into vector weights. More...

void	getMolecularWeights (doublereal *weights) const
	Copy the vector of molecular weights into array weights. More...

const vector_fp &	molecularWeights () const
	Return a const reference to the internal vector of molecular weights. More...

void	getCharges (double *charges) const
	Copy the vector of species charges into array charges. More...

doublereal	elementalMassFraction (const size_t m) const
	Elemental mass fraction of element m. More...

doublereal	elementalMoleFraction (const size_t m) const
	Elemental mole fraction of element m. More...

const double *	moleFractdivMMW () const
	Returns a const pointer to the start of the moleFraction/MW array. More...

doublereal	charge (size_t k) const
	Dimensionless electrical charge of a single molecule of species k The charge is normalized by the the magnitude of the electron charge. More...

doublereal	chargeDensity () const
	Charge density [C/m^3]. More...

size_t	nDim () const
	Returns the number of spatial dimensions (1, 2, or 3) More...

void	setNDim (size_t ndim)
	Set the number of spatial dimensions (1, 2, or 3). More...

virtual bool	ready () const
	Returns a bool indicating whether the object is ready for use. More...

int	stateMFNumber () const
	Return the State Mole Fraction Number. More...

bool	caseSensitiveSpecies () const
	Returns `true` if case sensitive species names are enforced. More...

void	setCaseSensitiveSpecies (bool cflag=true)
	Set flag that determines whether case sensitive species are enforced in look-up operations, for example speciesIndex. More...

virtual void	setRoot (std::shared_ptr< Solution > root)
	Set root Solution holding all phase information. More...

vector_fp	getCompositionFromMap (const compositionMap &comp) const
	Converts a compositionMap to a vector with entries for each species Species that are not specified are set to zero in the vector. More...

void	massFractionsToMoleFractions (const double Y, double X) const
	Converts a mixture composition from mole fractions to mass fractions. More...

void	moleFractionsToMassFractions (const double X, double Y) const
	Converts a mixture composition from mass fractions to mole fractions. More...

std::string	name () const
	Return the name of the phase. More...

void	setName (const std::string &nm)
	Sets the string name for the phase. More...

std::string	elementName (size_t m) const
	Name of the element with index m. More...

size_t	elementIndex (const std::string &name) const
	Return the index of element named 'name'. More...

const std::vector< std::string > &	elementNames () const
	Return a read-only reference to the vector of element names. More...

doublereal	atomicWeight (size_t m) const
	Atomic weight of element m. More...

doublereal	entropyElement298 (size_t m) const
	Entropy of the element in its standard state at 298 K and 1 bar. More...

int	atomicNumber (size_t m) const
	Atomic number of element m. More...

int	elementType (size_t m) const
	Return the element constraint type Possible types include: More...

int	changeElementType (int m, int elem_type)
	Change the element type of the mth constraint Reassigns an element type. More...

const vector_fp &	atomicWeights () const
	Return a read-only reference to the vector of atomic weights. More...

size_t	nElements () const
	Number of elements. More...

void	checkElementIndex (size_t m) const
	Check that the specified element index is in range. More...

void	checkElementArraySize (size_t mm) const
	Check that an array size is at least nElements(). More...

doublereal	nAtoms (size_t k, size_t m) const
	Number of atoms of element `m` in species `k`. More...

void	getAtoms (size_t k, double *atomArray) const
	Get a vector containing the atomic composition of species k. More...

size_t	speciesIndex (const std::string &name) const
	Returns the index of a species named 'name' within the Phase object. More...

std::string	speciesName (size_t k) const
	Name of the species with index k. More...

std::string	speciesSPName (int k) const
	Returns the expanded species name of a species, including the phase name This is guaranteed to be unique within a Cantera problem. More...

const std::vector< std::string > &	speciesNames () const
	Return a const reference to the vector of species names. More...

size_t	nSpecies () const
	Returns the number of species in the phase. More...

void	checkSpeciesIndex (size_t k) const
	Check that the specified species index is in range. More...

void	checkSpeciesArraySize (size_t kk) const
	Check that an array size is at least nSpecies(). More...

void	setMoleFractionsByName (const compositionMap &xMap)
	Set the species mole fractions by name. More...

void	setMoleFractionsByName (const std::string &x)
	Set the mole fractions of a group of species by name. More...

void	setMassFractionsByName (const compositionMap &yMap)
	Set the species mass fractions by name. More...

void	setMassFractionsByName (const std::string &x)
	Set the species mass fractions by name. More...

void	setState_TRX (doublereal t, doublereal dens, const doublereal *x)
	Set the internally stored temperature (K), density, and mole fractions. More...

void	setState_TRX (doublereal t, doublereal dens, const compositionMap &x)
	Set the internally stored temperature (K), density, and mole fractions. More...

void	setState_TRY (doublereal t, doublereal dens, const doublereal *y)
	Set the internally stored temperature (K), density, and mass fractions. More...

void	setState_TRY (doublereal t, doublereal dens, const compositionMap &y)
	Set the internally stored temperature (K), density, and mass fractions. More...

void	setState_TNX (doublereal t, doublereal n, const doublereal *x)
	Set the internally stored temperature (K), molar density (kmol/m^3), and mole fractions. More...

void	setState_TR (doublereal t, doublereal rho)
	Set the internally stored temperature (K) and density (kg/m^3) More...

void	setState_TX (doublereal t, doublereal *x)
	Set the internally stored temperature (K) and mole fractions. More...

void	setState_TY (doublereal t, doublereal *y)
	Set the internally stored temperature (K) and mass fractions. More...

void	setState_RX (doublereal rho, doublereal *x)
	Set the density (kg/m^3) and mole fractions. More...

void	setState_RY (doublereal rho, doublereal *y)
	Set the density (kg/m^3) and mass fractions. More...

compositionMap	getMoleFractionsByName (double threshold=0.0) const
	Get the mole fractions by name. More...

double	moleFraction (size_t k) const
	Return the mole fraction of a single species. More...

double	moleFraction (const std::string &name) const
	Return the mole fraction of a single species. More...

compositionMap	getMassFractionsByName (double threshold=0.0) const
	Get the mass fractions by name. More...

double	massFraction (size_t k) const
	Return the mass fraction of a single species. More...

double	massFraction (const std::string &name) const
	Return the mass fraction of a single species. More...

void	getMoleFractions (double *const x) const
	Get the species mole fraction vector. More...

virtual void	setMoleFractions_NoNorm (const double *const x)
	Set the mole fractions to the specified values without normalizing. More...

void	getMassFractions (double *const y) const
	Get the species mass fractions. More...

const double *	massFractions () const
	Return a const pointer to the mass fraction array. More...

void	getConcentrations (double *const c) const
	Get the species concentrations (kmol/m^3). More...

double	concentration (const size_t k) const
	Concentration of species k. More...

virtual void	setConcentrationsNoNorm (const double *const conc)
	Set the concentrations without ignoring negative concentrations. More...

doublereal	temperature () const
	Temperature (K). More...

virtual double	electronTemperature () const
	Electron Temperature (K) More...

virtual double	density () const
	Density (kg/m^3). More...

double	molarDensity () const
	Molar density (kmol/m^3). More...

double	molarVolume () const
	Molar volume (m^3/kmol). More...

virtual void	setDensity (const double density_)
	Set the internally stored density (kg/m^3) of the phase. More...

virtual void	setMolarDensity (const double molarDensity)
	Set the internally stored molar density (kmol/m^3) of the phase. More...

virtual void	setTemperature (double temp)
	Set the internally stored temperature of the phase (K). More...

virtual void	setElectronTemperature (double etemp)
	Set the internally stored electron temperature of the phase (K). More...

doublereal	mean_X (const doublereal *const Q) const
	Evaluate the mole-fraction-weighted mean of an array Q. More...

doublereal	mean_X (const vector_fp &Q) const
	Evaluate the mole-fraction-weighted mean of an array Q. More...

doublereal	meanMolecularWeight () const
	The mean molecular weight. Units: (kg/kmol) More...

doublereal	sum_xlogx () const
	Evaluate \( \sum_k X_k \log X_k \). More...

size_t	addElement (const std::string &symbol, doublereal weight=-12345.0, int atomicNumber=0, doublereal entropy298=ENTROPY298_UNKNOWN, int elem_type=CT_ELEM_TYPE_ABSPOS)
	Add an element. More...

void	addSpeciesAlias (const std::string &name, const std::string &alias)
	Add a species alias (that is, a user-defined alternative species name). More...

virtual std::vector< std::string >	findIsomers (const compositionMap &compMap) const
	Return a vector with isomers names matching a given composition map. More...

virtual std::vector< std::string >	findIsomers (const std::string &comp) const
	Return a vector with isomers names matching a given composition string. More...

shared_ptr< Species >	species (const std::string &name) const
	Return the Species object for the named species. More...

shared_ptr< Species >	species (size_t k) const
	Return the Species object for species whose index is k. More...

void	ignoreUndefinedElements ()
	Set behavior when adding a species containing undefined elements to just skip the species. More...

void	addUndefinedElements ()
	Set behavior when adding a species containing undefined elements to add those elements to the phase. More...

void	throwUndefinedElements ()
	Set the behavior when adding a species containing undefined elements to throw an exception. More...

Protected Attributes
doublereal	m_press
	Current value of the pressure. More...

doublereal	m_molar_density
	Current value of the molar density. More...

std::vector< shared_ptr< ThermoPhase > >	m_lattice
	Vector of sublattic ThermoPhase objects. More...

vector_fp	m_x
	Vector of mole fractions. More...

vector_fp	theta_
	Lattice stoichiometric coefficients. More...

vector_fp	tmpV_
	Temporary vector. More...

std::vector< size_t >	lkstart_

AnyMap	m_rootNode
	Root node of the AnyMap which contains this phase definition. More...

Protected Attributes inherited from ThermoPhase
MultiSpeciesThermo	m_spthermo
	Pointer to the calculation manager for species reference-state thermodynamic properties. More...

AnyMap	m_input
	Data supplied via setParameters. More...

std::vector< const XML_Node * >	m_speciesData
	Vector of pointers to the species databases. More...

doublereal	m_phi
	Stored value of the electric potential for this phase. Units are Volts. More...

bool	m_chargeNeutralityNecessary
	Boolean indicating whether a charge neutrality condition is a necessity. More...

int	m_ssConvention
	Contains the standard state convention. More...

doublereal	m_tlast
	last value of the temperature processed by reference state More...

Protected Attributes inherited from Phase
ValueCache	m_cache
	Cached for saved calculations within each ThermoPhase. More...

size_t	m_kk
	Number of species in the phase. More...

size_t	m_ndim
	Dimensionality of the phase. More...

vector_fp	m_speciesComp
	Atomic composition of the species. More...

vector_fp	m_speciesCharge
	Vector of species charges. length m_kk. More...

std::map< std::string, shared_ptr< Species > >	m_species

UndefElement::behavior	m_undefinedElementBehavior
	Flag determining behavior when adding species with an undefined element. More...

bool	m_caseSensitiveSpecies
	Flag determining whether case sensitive species names are enforced. More...

Private Member Functions
void	_updateThermo () const
	Update the reference thermodynamic functions. More...

Additional Inherited Members
Protected Member Functions inherited from ThermoPhase
virtual void	getCsvReportData (std::vector< std::string > &names, std::vector< vector_fp > &data) const
	Fills `names` and `data` with the column names and species thermo properties to be included in the output of the reportCSV method. More...

Protected Member Functions inherited from Phase
void	assertCompressible (const std::string &setter) const
	Ensure that phase is compressible. More...

void	assignDensity (const double density_)
	Set the internally stored constant density (kg/m^3) of the phase. More...

void	setMolecularWeight (const int k, const double mw)
	Set the molecular weight of a single species to a given value. More...

virtual void	compositionChanged ()
	Apply changes to the state which are needed after the composition changes. More...

Detailed Description

A phase that is comprised of a fixed additive combination of other lattice phases.

This is the main way Cantera describes semiconductors and other solid phases. This ThermoPhase object calculates its properties as a sum over other LatticePhase objects. Each of the LatticePhase objects is a ThermoPhase object by itself.

The results from this LatticeSolidPhase model reduces to the LatticePhase model when there is one lattice phase and the molar densities of the sublattice and the molar density within the LatticeSolidPhase have the same values.

The mole fraction vector is redefined within the LatticeSolidPhase object. Each of the mole fractions sum to one on each of the sublattices. The routine getMoleFraction() and setMoleFraction() have been redefined to use this convention.

Specification of Species Standard State Properties

The standard state properties are calculated in the normal way for each of the sublattices. The normal way here means that a thermodynamic polynomial in temperature is developed. Also, a constant volume approximation for the pressure dependence is assumed. All of these properties are on a Joules per kmol of sublattice constituent basis.

Specification of Solution Thermodynamic Properties

The sum over the LatticePhase objects is carried out by weighting each LatticePhase object value with the molar density (kmol m-3) of its LatticePhase. Then the resulting quantity is divided by the molar density of the total compound. The LatticeSolidPhase object therefore only contains a listing of the number of LatticePhase object that comprises the solid, and it contains a value for the molar density of the entire mixture. This is the same thing as saying that

\[ L_i = L^{solid} \theta_i \]

\( L_i \) is the molar volume of the ith lattice. \( L^{solid} \) is the molar volume of the entire solid. \( \theta_i \) is a fixed weighting factor for the ith lattice representing the lattice stoichiometric coefficient. For this object the \( \theta_i \) values are fixed.

Let's take FeS2 as an example, which may be thought of as a combination of two lattices: Fe and S lattice. The Fe sublattice has a molar density of 1 gmol cm-3. The S sublattice has a molar density of 2 gmol cm-3. We then define the LatticeSolidPhase object as having a nominal composition of FeS2, and having a molar density of 1 gmol cm-3. All quantities pertaining to the FeS2 compound will be have weights associated with the sublattices. The Fe sublattice will have a weight of 1.0 associated with it. The S sublattice will have a weight of 2.0 associated with it.

Specification of Solution Density Properties

Currently, molar density is not a constant within the object, even though the species molar volumes are a constant. The basic idea is that a swelling of one of the sublattices will result in a swelling of of all of the lattices. Therefore, the molar volumes of the individual lattices are not independent of one another.

The molar volume of the Lattice solid is calculated from the following formula

\[ V = \sum_i{ \theta_i V_i^{lattice}} \]

where \( V_i^{lattice} \) is the molar volume of the ith sublattice. This is calculated from the following standard formula.

\[ V_i = \sum_k{ X_k V_k} \]

where k is a species in the ith sublattice.

The mole fraction vector is redefined witin the the LatticeSolidPhase object. Each of the mole fractions sum to one on each of the sublattices. The routine getMoleFraction() and setMoleFraction() have been redefined to use this convention.

(This object is still under construction)

Definition at line 104 of file LatticeSolidPhase.h.

Constructor & Destructor Documentation

◆ LatticeSolidPhase()

LatticeSolidPhase ( )

Base empty constructor.

Definition at line 27 of file LatticeSolidPhase.cpp.

Member Function Documentation

◆ type()

virtual std::string type ( ) const

inlinevirtual

String indicating the thermodynamic model implemented.

Usually corresponds to the name of the derived class, less any suffixes such as "Phase", TP", "VPSS", etc.

Reimplemented from ThermoPhase.

Definition at line 110 of file LatticeSolidPhase.h.

◆ phaseOfMatter()

virtual std::string phaseOfMatter ( ) const

inlinevirtual

String indicating the mechanical phase of the matter in this Phase.

LatticeSolid phases only represent solids.

Reimplemented from ThermoPhase.

Definition at line 118 of file LatticeSolidPhase.h.

◆ isCompressible()

virtual bool isCompressible ( ) const

inlinevirtual

Return whether phase represents a compressible substance.

Reimplemented from Phase.

Definition at line 122 of file LatticeSolidPhase.h.

◆ nativeState()

std::map< std::string, size_t > nativeState ( ) const

inlinevirtual

Return a map of properties defining the native state of a substance.

By default, entries include "T", "D", "Y" for a compressible substance and "T", "P", "Y" for an incompressible substance, with offsets 0, 1 and 2, respectively. Mass fractions "Y" are omitted for pure species. In all cases, offsets into the state vector are used by saveState() and restoreState().

Reimplemented from Phase.

Definition at line 126 of file LatticeSolidPhase.h.

◆ minTemp()

doublereal minTemp ( size_t k = npos ) const

virtual

Minimum temperature for which the thermodynamic data for the species or phase are valid.

If no argument is supplied, the value returned will be the lowest temperature at which the data for all species are valid. Otherwise, the value will be only for species k. This function is a wrapper that calls the species thermo minTemp function.

Parameters

k	index of the species. Default is -1, which will return the max of the min value over all species.

Reimplemented from ThermoPhase.

Definition at line 33 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::m_lattice, and Cantera::npos.

◆ maxTemp()

doublereal maxTemp ( size_t k = npos ) const

virtual

Maximum temperature for which the thermodynamic data for the species are valid.

If no argument is supplied, the value returned will be the highest temperature at which the data for all species are valid. Otherwise, the value will be only for species k. This function is a wrapper that calls the species thermo maxTemp function.

Parameters

k	index of the species. Default is -1, which will return the min of the max value over all species.

Reimplemented from ThermoPhase.

Definition at line 50 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::m_lattice, and Cantera::npos.

◆ refPressure()

doublereal refPressure ( ) const

virtual

Returns the reference pressure in Pa.

This function is a wrapper that calls the species thermo refPressure function.

Reimplemented from ThermoPhase.

Definition at line 67 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::m_lattice.

◆ standardStateConvention()

virtual int standardStateConvention ( ) const

inlinevirtual

This method returns the convention used in specification of the standard state, of which there are currently two, temperature based, and variable pressure based.

All of the thermo is determined by slave ThermoPhase routines.

Reimplemented from ThermoPhase.

Definition at line 140 of file LatticeSolidPhase.h.

References Cantera::cSS_CONVENTION_SLAVE.

◆ enthalpy_mole()

doublereal enthalpy_mole ( ) const

virtual

Return the Molar Enthalpy. Units: J/kmol.

The molar enthalpy is determined by the following formula, where \( \theta_n \) is the lattice stoichiometric coefficient of the nth lattice

\[ \tilde h(T,P) = {\sum_n \theta_n \tilde h_n(T,P) } \]

\( \tilde h_n(T,P) \) is the enthalpy of the nth lattice.

units J/kmol

Reimplemented from ThermoPhase.

Definition at line 72 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

◆ intEnergy_mole()

doublereal intEnergy_mole ( ) const

virtual

Return the Molar Internal Energy. Units: J/kmol.

The molar enthalpy is determined by the following formula, where \( \theta_n \) is the lattice stoichiometric coefficient of the nth lattice

\[ \tilde u(T,P) = {\sum_n \theta_n \tilde u_n(T,P) } \]

\( \tilde u_n(T,P) \) is the internal energy of the nth lattice.

units J/kmol

Reimplemented from ThermoPhase.

Definition at line 82 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

◆ entropy_mole()

doublereal entropy_mole ( ) const

virtual

Return the Molar Entropy. Units: J/kmol/K.

The molar enthalpy is determined by the following formula, where \( \theta_n \) is the lattice stoichiometric coefficient of the nth lattice

\[ \tilde s(T,P) = \sum_n \theta_n \tilde s_n(T,P) \]

\( \tilde s_n(T,P) \) is the molar entropy of the nth lattice.

units J/kmol/K

Reimplemented from ThermoPhase.

Definition at line 92 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

◆ gibbs_mole()

doublereal gibbs_mole ( ) const

virtual

Return the Molar Gibbs energy. Units: J/kmol.

The molar Gibbs free energy is determined by the following formula, where \( \theta_n \) is the lattice stoichiometric coefficient of the nth lattice

\[ \tilde h(T,P) = {\sum_n \theta_n \tilde h_n(T,P) } \]

\( \tilde h_n(T,P) \) is the enthalpy of the nth lattice.

units J/kmol

Reimplemented from ThermoPhase.

Definition at line 102 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

◆ cp_mole()

doublereal cp_mole ( ) const

virtual

Return the constant pressure heat capacity. Units: J/kmol/K.

The molar constant pressure heat capacity is determined by the following formula, where \( C_n \) is the lattice molar density of the nth lattice, and \( C_T \) is the molar density of the solid compound.

\[ \tilde c_{p,n}(T,P) = \frac{\sum_n C_n \tilde c_{p,n}(T,P) }{C_T}, \]

\( \tilde c_{p,n}(T,P) \) is the heat capacity of the nth lattice.

units J/kmol/K

Reimplemented from ThermoPhase.

Definition at line 112 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

Referenced by LatticeSolidPhase::cv_mole().

◆ cv_mole()

virtual doublereal cv_mole ( ) const

inlinevirtual

Return the constant volume heat capacity. Units: J/kmol/K.

The molar constant volume heat capacity is determined by the following formula, where \( C_n \) is the lattice molar density of the nth lattice, and \( C_T \) is the molar density of the solid compound.

\[ \tilde c_{v,n}(T,P) = \frac{\sum_n C_n \tilde c_{v,n}(T,P) }{C_T}, \]

\( \tilde c_{v,n}(T,P) \) is the heat capacity of the nth lattice.

units J/kmol/K

Reimplemented from ThermoPhase.

Definition at line 235 of file LatticeSolidPhase.h.

References LatticeSolidPhase::cp_mole().

◆ pressure()

virtual doublereal pressure ( ) const

inlinevirtual

Report the Pressure. Units: Pa.

This method simply returns the stored pressure value.

Reimplemented from Phase.

Definition at line 243 of file LatticeSolidPhase.h.

References LatticeSolidPhase::m_press.

◆ setPressure()

void setPressure ( doublereal p )

virtual

Set the pressure at constant temperature. Units: Pa.

Parameters

p	Pressure (units - Pa)

Reimplemented from Phase.

Definition at line 154 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::calcDensity(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::m_press.

◆ calcDensity()

doublereal calcDensity ( )

Calculate the density of the solid mixture.

The formula for this is

\[ \rho = \sum_n{ \rho_n \theta_n } \]

where \( \rho_n \) is the density of the nth sublattice

Definition at line 163 of file LatticeSolidPhase.cpp.

References Phase::assignDensity(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

Referenced by LatticeSolidPhase::setMoleFractions(), and LatticeSolidPhase::setPressure().

◆ setMoleFractions()

void setMoleFractions ( const doublereal *const x )

virtual

Set the mole fractions to the specified values, and then normalize them so that they sum to 1.0 for each of the subphases.

On input, the mole fraction vector is assumed to sum to one for each of the sublattices. The sublattices are updated with this mole fraction vector. The mole fractions are also stored within this object, after they are normalized to one by dividing by the number of sublattices.

Parameters

x	Input vector of mole fractions. There is no restriction on the sum of the mole fraction vector. Internally, this object will pass portions of this vector to the sublattices which assume that the portions individually sum to one. Length is m_kk.

Reimplemented from Phase.

Definition at line 173 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::calcDensity(), LatticeSolidPhase::m_lattice, LatticeSolidPhase::m_x, and Phase::setMoleFractions().

Referenced by LatticeSolidPhase::initThermo(), and LatticeSolidPhase::setLatticeMoleFractionsByName().

◆ getMoleFractions()

void getMoleFractions ( doublereal *const x ) const

virtual

Get the species mole fraction vector.

On output the mole fraction vector will sum to one for each of the subphases which make up this phase.

Parameters

x	On return, x contains the mole fractions. Must have a length greater than or equal to the number of species.

Definition at line 188 of file LatticeSolidPhase.cpp.

References Phase::getMoleFractions(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::m_x.

Referenced by LatticeSolidPhase::_updateThermo().

◆ moleFraction()

virtual doublereal moleFraction ( const int k ) const

inlinevirtual

Definition at line 290 of file LatticeSolidPhase.h.

◆ getMassFractions()

virtual void getMassFractions ( doublereal *const y ) const

inlinevirtual

Definition at line 294 of file LatticeSolidPhase.h.

◆ massFraction()

virtual doublereal massFraction ( const int k ) const

inlinevirtual

Definition at line 298 of file LatticeSolidPhase.h.

◆ setMassFractions()

virtual void setMassFractions ( const doublereal *const y )

inlinevirtual

Set the mass fractions to the specified values and normalize them.

Parameters

[in] y Array of unnormalized mass fraction values. Length must be greater than or equal to the number of species. The Phase object will normalize this vector before storing its contents.

Reimplemented from Phase.

Definition at line 302 of file LatticeSolidPhase.h.

◆ setMassFractions_NoNorm()

virtual void setMassFractions_NoNorm ( const doublereal *const y )

inlinevirtual

Set the mass fractions to the specified values without normalizing.

This is useful when the normalization condition is being handled by some other means, for example by a constraint equation as part of a larger set of equations.

Parameters

y	Input vector of mass fractions. Length is m_kk.

Reimplemented from Phase.

Definition at line 306 of file LatticeSolidPhase.h.

◆ getConcentrations()

virtual void getConcentrations ( doublereal *const c ) const

inlinevirtual

Definition at line 310 of file LatticeSolidPhase.h.

◆ concentration()

virtual doublereal concentration ( int k ) const

inlinevirtual

Definition at line 314 of file LatticeSolidPhase.h.

◆ setConcentrations()

virtual void setConcentrations ( const doublereal *const conc )

inlinevirtual

Set the concentrations to the specified values within the phase.

We set the concentrations here and therefore we set the overall density of the phase. We hold the temperature constant during this operation. Therefore, we have possibly changed the pressure of the phase by calling this routine.

Parameters

[in] conc Array of concentrations in dimensional units. For bulk phases c[k] is the concentration of the kth species in kmol/m3. For surface phases, c[k] is the concentration in kmol/m2. The length of the vector is the number of species in the phase.

Reimplemented from Phase.

Definition at line 318 of file LatticeSolidPhase.h.

◆ standardConcentrationUnits()

Units standardConcentrationUnits ( ) const

virtual

Returns the units of the "standard concentration" for this phase.

These are the units of the values returned by the functions getActivityConcentrations() and standardConcentration(), which can vary between different ThermoPhase-derived classes, or change within a single class depending on input options. See the documentation for standardConcentration() for the derived class for specific details.

Reimplemented from ThermoPhase.

Definition at line 122 of file LatticeSolidPhase.cpp.

◆ getActivityConcentrations()

void getActivityConcentrations ( doublereal * c ) const

virtual

This method returns an array of generalized concentrations.

\( C^a_k\) are defined such that \( a_k = C^a_k / C^0_k, \) where \( C^0_k \) is a standard concentration defined below and \( a_k \) are activities used in the thermodynamic functions. These activity (or generalized) concentrations are used by kinetics manager classes to compute the forward and reverse rates of elementary reactions. Note that they may or may not have units of concentration — they might be partial pressures, mole fractions, or surface coverages, for example.

Parameters

c	Output array of generalized concentrations. The units depend upon the implementation of the reaction rate expressions within the phase.

Reimplemented from ThermoPhase.

Definition at line 127 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ getActivityCoefficients()

void getActivityCoefficients ( doublereal * ac ) const

virtual

Get the array of non-dimensional molar-based activity coefficients at the current solution temperature, pressure, and solution concentration.

Parameters

ac	Output vector of activity coefficients. Length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 137 of file LatticeSolidPhase.cpp.

References Phase::m_kk.

◆ getChemPotentials()

void getChemPotentials ( doublereal * mu ) const

virtual

Get the species chemical potentials. Units: J/kmol.

This function returns a vector of chemical potentials of the species in solution at the current temperature, pressure and mole fraction of the solution.

This returns the underlying lattice chemical potentials, as the units are kmol-1 of the sublattice species.

Parameters

mu	Output vector of species chemical potentials. Length: m_kk. Units: J/kmol

Reimplemented from ThermoPhase.

Definition at line 216 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ getPartialMolarEnthalpies()

void getPartialMolarEnthalpies ( doublereal * hbar ) const

virtual

Returns an array of partial molar enthalpies for the species in the mixture.

Units (J/kmol). For this phase, the partial molar enthalpies are equal to the pure species enthalpies

\[ \bar h_k(T,P) = \hat h^{ref}_k(T) + (P - P_{ref}) \hat V^0_k \]

The reference-state pure-species enthalpies, \( \hat h^{ref}_k(T) \), at the reference pressure, \( P_{ref} \), are computed by the species thermodynamic property manager. They are polynomial functions of temperature.

See also: MultiSpeciesThermo

Parameters

hbar	Output vector containing partial molar enthalpies. Length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 227 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ getPartialMolarEntropies()

void getPartialMolarEntropies ( doublereal * sbar ) const

virtual

Returns an array of partial molar entropies of the species in the solution.

Units: J/kmol/K. For this phase, the partial molar entropies are equal to the pure species entropies plus the ideal solution contribution.

\[ \bar s_k(T,P) = \hat s^0_k(T) - R log(X_k) \]

The reference-state pure-species entropies, \( \hat s^{ref}_k(T) \), at the reference pressure, \( P_{ref} \), are computed by the species thermodynamic property manager. They are polynomial functions of temperature.

See also: MultiSpeciesThermo

Parameters

sbar	Output vector containing partial molar entropies. Length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 238 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ getPartialMolarCp()

void getPartialMolarCp ( doublereal * cpbar ) const

virtual

Returns an array of partial molar Heat Capacities at constant pressure of the species in the solution.

Units: J/kmol/K. For this phase, the partial molar heat capacities are equal to the standard state heat capacities.

Parameters

cpbar Output vector of partial heat capacities. Length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 249 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ getPartialMolarVolumes()

void getPartialMolarVolumes ( doublereal * vbar ) const

virtual

returns an array of partial molar volumes of the species in the solution.

Units: m^3 kmol-1.

For this solution, the partial molar volumes are equal to the constant species molar volumes.

Parameters

vbar	Output vector of partial molar volumes. Length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 260 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ getStandardChemPotentials()

void getStandardChemPotentials ( doublereal * mu0 ) const

virtual

Get the array of standard state chemical potentials at unit activity for the species at their standard states at the current T and P of the solution.

These are the standard state chemical potentials \( \mu^0_k(T,P) \). The values are evaluated at the current temperature and pressure of the solution.

This returns the underlying lattice standard chemical potentials, as the units are kmol-1 of the sublattice species.

Parameters

mu0	Output vector of chemical potentials. Length: m_kk. Units: J/kmol

Reimplemented from ThermoPhase.

Definition at line 271 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

◆ standardConcentration()

doublereal standardConcentration ( size_t k = 0 ) const

virtual

Return the standard concentration for the kth species.

The standard concentration \( C^0_k \) used to normalize the activity (that is, generalized) concentration. In many cases, this quantity will be the same for all species in a phase - for example, for an ideal gas \( C^0_k = P/\hat R T \). For this reason, this method returns a single value, instead of an array. However, for phases in which the standard concentration is species-specific (such as surface species of different sizes), this method may be called with an optional parameter indicating the species.

Parameters

k	Optional parameter indicating the species. The default is to assume this refers to species 0.

Returns: Returns the standard concentration. The units are by definition dependent on the ThermoPhase and kinetics manager representation.

Reimplemented from ThermoPhase.

Definition at line 144 of file LatticeSolidPhase.cpp.

◆ logStandardConc()

doublereal logStandardConc ( size_t k = 0 ) const

virtual

Natural logarithm of the standard concentration of the kth species.

Parameters

k	index of the species (defaults to zero)

Reimplemented from ThermoPhase.

Definition at line 149 of file LatticeSolidPhase.cpp.

◆ getGibbs_RT_ref()

void getGibbs_RT_ref ( doublereal * grt ) const

virtual

Returns the vector of nondimensional Gibbs Free Energies of the reference state at the current temperature of the solution and the reference pressure for the species.

Parameters

grt	Output vector containing the nondimensional reference state Gibbs Free energies. Length: m_kk.

Reimplemented from ThermoPhase.

Definition at line 281 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), and LatticeSolidPhase::m_lattice.

Referenced by LatticeSolidPhase::getGibbs_ref().

◆ getGibbs_ref()

void getGibbs_ref ( doublereal * g ) const

virtual

Returns the vector of the Gibbs function of the reference state at the current temperature of the solution and the reference pressure for the species.

Parameters

g	Output vector containing the reference state Gibbs Free energies. Length: m_kk. Units: J/kmol.

Reimplemented from ThermoPhase.

Definition at line 289 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::getGibbs_RT_ref(), Phase::m_kk, and ThermoPhase::RT().

◆ addSpecies()

bool addSpecies ( shared_ptr< Species > spec )

virtual

The following methods are used in the process of constructing the phase and setting its parameters from a specification in an input file. They are not normally used in application programs. To see how they are used, see importPhase().

Reimplemented from ThermoPhase.

Definition at line 352 of file LatticeSolidPhase.cpp.

◆ addLattice()

void addLattice ( shared_ptr< ThermoPhase > lattice )

Add a lattice to this phase.

Definition at line 358 of file LatticeSolidPhase.cpp.

References Phase::addElement(), ThermoPhase::addSpecies(), LatticeSolidPhase::m_lattice, LatticeSolidPhase::m_x, LatticeSolidPhase::theta_, and LatticeSolidPhase::tmpV_.

Referenced by LatticeSolidPhase::initThermo(), and LatticeSolidPhase::setParametersFromXML().

◆ setLatticeStoichiometry()

void setLatticeStoichiometry ( const compositionMap & comp )

Set the lattice stoichiometric coefficients, \( \theta_i \).

Definition at line 385 of file LatticeSolidPhase.cpp.

References Phase::addElement(), CT_ELEM_TYPE_LATTICERATIO, Cantera::getValue(), LatticeSolidPhase::m_lattice, Phase::m_speciesComp, Phase::name(), Phase::nElements(), and LatticeSolidPhase::theta_.

Referenced by LatticeSolidPhase::initThermo(), and LatticeSolidPhase::setParametersFromXML().

◆ setParameters()

void setParameters	(	const AnyMap &	phaseNode,
		const AnyMap &	rootNode = `AnyMap()`
	)

virtual

Set equation of state parameters from an AnyMap phase description.

Phases that need additional parameters from the root node should override this method.

Reimplemented from ThermoPhase.

Definition at line 297 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::m_rootNode, and ThermoPhase::setParameters().

◆ initThermo()

void initThermo ( )

virtual

Initialize the ThermoPhase object after all species have been set up.

Initialize.

This method is provided to allow subclasses to perform any initialization required after all species have been added. For example, it might be used to resize internal work arrays that must have an entry for each species. The base class implementation does nothing, and subclasses that do not require initialization do not need to overload this method. Derived classes which do override this function should call their parent class's implementation of this function as their last action.

When importing a CTML phase description, this method is called from initThermoXML(), which is called from importPhase(), just prior to returning from function importPhase().

When importing from an AnyMap phase description (or from a YAML file), this method is responsible for setting model parameters from the data stored in m_input.

Reimplemented from ThermoPhase.

Definition at line 304 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::addLattice(), AnyMap::hasKey(), ThermoPhase::initThermo(), ThermoPhase::m_input, LatticeSolidPhase::m_rootNode, LatticeSolidPhase::m_x, Cantera::newPhase(), LatticeSolidPhase::setLatticeStoichiometry(), and LatticeSolidPhase::setMoleFractions().

◆ getParameters()

void getParameters ( AnyMap & phaseNode ) const

virtual

Store the parameters of a ThermoPhase object such that an identical one could be reconstructed using the newPhase(AnyMap&) function.

This does not include user-defined fields available in input().

Reimplemented from ThermoPhase.

Definition at line 319 of file LatticeSolidPhase.cpp.

References AnyMap::erase(), ThermoPhase::getParameters(), LatticeSolidPhase::m_lattice, and LatticeSolidPhase::theta_.

◆ getSpeciesParameters()

void getSpeciesParameters	(	const std::string &	name,
		AnyMap &	speciesNode
	)		const

virtual

Get phase-specific parameters of a Species object such that an identical one could be reconstructed and added to this phase.

Parameters

name	Name of the species
speciesNode	Mapping to be populated with parameters

Reimplemented from ThermoPhase.

Definition at line 339 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::m_lattice, Phase::name(), and Cantera::npos.

◆ setParametersFromXML()

void setParametersFromXML ( const XML_Node & eosdata )

virtual

Set equation of state parameter values from XML entries.

This method is called by function importPhase() when processing a phase definition in an input file. It should be overloaded in subclasses to set any parameters that are specific to that particular phase model. Note, this method is called before the phase is initialized with elements and/or species.

Parameters

eosdata An XML_Node object corresponding to the "thermo" entry for this phase in the input file.

Deprecated:: The XML input format is deprecated and will be removed in Cantera 3.0.

Reimplemented from ThermoPhase.

Definition at line 436 of file LatticeSolidPhase.cpp.

References XML_Node::_require(), LatticeSolidPhase::addLattice(), XML_Node::child(), XML_Node::getChildren(), Cantera::newPhase(), Cantera::parseCompString(), LatticeSolidPhase::setLatticeStoichiometry(), and XML_Node::value().

◆ setLatticeMoleFractionsByName()

void setLatticeMoleFractionsByName	(	int	n,
		const std::string &	x
	)

Set the Lattice mole fractions using a string.

Parameters

n	Integer value of the lattice whose mole fractions are being set
x	string containing Name:value pairs that will specify the mole fractions of species on a particular lattice

Definition at line 421 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::m_lattice, LatticeSolidPhase::m_x, and LatticeSolidPhase::setMoleFractions().

◆ modifyOneHf298SS()

void modifyOneHf298SS	(	const size_t	k,
		const doublereal	Hf298New
	)

virtual

Modify the value of the 298 K Heat of Formation of one species in the phase (J kmol-1)

The 298K heat of formation is defined as the enthalpy change to create the standard state of the species from its constituent elements in their standard states at 298 K and 1 bar.

Parameters

k	Species k
Hf298New	Specify the new value of the Heat of Formation at 298K and 1 bar

Reimplemented from ThermoPhase.

Definition at line 447 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), ThermoPhase::invalidateCache(), LatticeSolidPhase::m_lattice, and MultiSpeciesThermo::modifyOneHf298().

◆ resetHf298()

void resetHf298 ( const size_t k = npos )

virtual

Restore the original heat of formation of one or more species.

Resets changes made by modifyOneHf298SS(). If the species index is not specified, the heats of formation for all species are restored.

Reimplemented from ThermoPhase.

Definition at line 460 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::_updateThermo(), ThermoPhase::invalidateCache(), LatticeSolidPhase::m_lattice, and Cantera::npos.

◆ _updateThermo()

void _updateThermo ( ) const

private

Update the reference thermodynamic functions.

Definition at line 405 of file LatticeSolidPhase.cpp.

References LatticeSolidPhase::getMoleFractions(), LatticeSolidPhase::m_lattice, LatticeSolidPhase::m_press, ThermoPhase::m_tlast, LatticeSolidPhase::m_x, and Phase::temperature().

Member Data Documentation

◆ m_press

doublereal m_press

protected

Current value of the pressure.

Definition at line 456 of file LatticeSolidPhase.h.

Referenced by LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::pressure(), and LatticeSolidPhase::setPressure().

◆ m_molar_density

doublereal m_molar_density

protected

Current value of the molar density.

Definition at line 459 of file LatticeSolidPhase.h.

◆ m_lattice

std::vector<shared_ptr<ThermoPhase> > m_lattice

protected

Vector of sublattic ThermoPhase objects.

Definition at line 462 of file LatticeSolidPhase.h.

◆ m_x

vector_fp m_x

mutableprotected

Vector of mole fractions.

Note these mole fractions sum to one when summed over all phases. However, this is not what's passed down to the lower m_lattice objects.

Definition at line 469 of file LatticeSolidPhase.h.

Referenced by LatticeSolidPhase::_updateThermo(), LatticeSolidPhase::addLattice(), LatticeSolidPhase::getMoleFractions(), LatticeSolidPhase::initThermo(), LatticeSolidPhase::setLatticeMoleFractionsByName(), and LatticeSolidPhase::setMoleFractions().

◆ theta_

vector_fp theta_

protected

Lattice stoichiometric coefficients.

Definition at line 472 of file LatticeSolidPhase.h.

Referenced by LatticeSolidPhase::addLattice(), LatticeSolidPhase::calcDensity(), LatticeSolidPhase::cp_mole(), LatticeSolidPhase::enthalpy_mole(), LatticeSolidPhase::entropy_mole(), LatticeSolidPhase::getParameters(), LatticeSolidPhase::gibbs_mole(), LatticeSolidPhase::intEnergy_mole(), and LatticeSolidPhase::setLatticeStoichiometry().

◆ tmpV_

vector_fp tmpV_

mutableprotected

Temporary vector.

Definition at line 475 of file LatticeSolidPhase.h.

Referenced by LatticeSolidPhase::addLattice().

◆ lkstart_

std::vector<size_t> lkstart_

protected

Definition at line 477 of file LatticeSolidPhase.h.

◆ m_rootNode

AnyMap m_rootNode

protected

Root node of the AnyMap which contains this phase definition.

Used to look up the phase definitions for the constituent phases.

Definition at line 481 of file LatticeSolidPhase.h.

Referenced by LatticeSolidPhase::initThermo(), and LatticeSolidPhase::setParameters().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Attributes

Private Member Functions

Additional Inherited Members

Detailed Description

Specification of Species Standard State Properties

Specification of Solution Thermodynamic Properties

Specification of Solution Density Properties

Constructor & Destructor Documentation

◆ LatticeSolidPhase()

Member Function Documentation

◆ type()

◆ phaseOfMatter()

◆ isCompressible()

◆ nativeState()

◆ minTemp()

◆ maxTemp()

◆ refPressure()

◆ standardStateConvention()

◆ enthalpy_mole()

◆ intEnergy_mole()

◆ entropy_mole()

◆ gibbs_mole()

◆ cp_mole()

◆ cv_mole()

◆ pressure()

◆ setPressure()

◆ calcDensity()

◆ setMoleFractions()

◆ getMoleFractions()

◆ moleFraction()

◆ getMassFractions()

◆ massFraction()

◆ setMassFractions()

◆ setMassFractions_NoNorm()

◆ getConcentrations()

◆ concentration()

◆ setConcentrations()

◆ standardConcentrationUnits()

◆ getActivityConcentrations()

◆ getActivityCoefficients()

◆ getChemPotentials()

◆ getPartialMolarEnthalpies()

◆ getPartialMolarEntropies()

◆ getPartialMolarCp()

◆ getPartialMolarVolumes()

◆ getStandardChemPotentials()

◆ standardConcentration()

◆ logStandardConc()

◆ getGibbs_RT_ref()

◆ getGibbs_ref()

◆ addSpecies()

◆ addLattice()

◆ setLatticeStoichiometry()

◆ setParameters()

◆ initThermo()

◆ getParameters()

◆ getSpeciesParameters()

◆ setParametersFromXML()

◆ setLatticeMoleFractionsByName()

◆ modifyOneHf298SS()

◆ resetHf298()

◆ _updateThermo()

Member Data Documentation

◆ m_press

◆ m_molar_density

◆ m_lattice

◆ m_x

◆ theta_

◆ tmpV_

◆ lkstart_

◆ m_rootNode