SpeciesNode Class Reference

Nodes in reaction path graphs. More...

#include <ReactionPath.h>

Public Member Functions
	SpeciesNode ()
	Default constructor. More...
virtual	~SpeciesNode ()
	Destructor. More...
int	nPaths () const
	Total number of paths to or from this node. More...
void	addPath (Path *path)
	add a path to or from this node More...
doublereal	outflow ()
doublereal	inflow ()
doublereal	netOutflow ()
void	printPaths ()
References.
Return a reference to a path object connecting this node to another node.
Path *	path (int n)
const Path *	path (int n) const

Public Attributes
size_t	number
	Species number. More...
std::string	name
	Label on graph. More...
doublereal	value
	May be used to set node appearance. More...
bool	visible
	Visible on graph;. More...

Protected Attributes
doublereal	m_in
doublereal	m_out
std::vector< Path * >	m_paths

Detailed Description

Nodes in reaction path graphs.

Definition at line 26 of file ReactionPath.h.

Constructor & Destructor Documentation

SpeciesNode()

SpeciesNode ( )

inline

Default constructor.

Definition at line 30 of file ReactionPath.h.

~SpeciesNode()

virtual ~SpeciesNode ( )

inlinevirtual

Destructor.

Definition at line 34 of file ReactionPath.h.

Member Function Documentation

path() [1/2]

Path * path ( int  n )

inline

Definition at line 48 of file ReactionPath.h.

path() [2/2]

const Path * path ( int  n ) const

inline

Definition at line 51 of file ReactionPath.h.

nPaths()

int nPaths ( ) const

inline

Total number of paths to or from this node.

Definition at line 57 of file ReactionPath.h.

addPath()

void addPath

(

Path *

path

)

add a path to or from this node

Definition at line 22 of file ReactionPath.cpp.

outflow()

doublereal outflow ( )

inline

Definition at line 64 of file ReactionPath.h.

inflow()

doublereal inflow ( )

inline

Definition at line 67 of file ReactionPath.h.

netOutflow()

doublereal netOutflow ( )

inline

Definition at line 70 of file ReactionPath.h.

printPaths()

void printPaths

(

)

Definition at line 34 of file ReactionPath.cpp.

Member Data Documentation

number

size_t number

Species number.

Definition at line 37 of file ReactionPath.h.

name

std::string name

Label on graph.

Definition at line 38 of file ReactionPath.h.

Referenced by ReactionPathDiagram::exportToDot().

value

doublereal value

May be used to set node appearance.

Definition at line 39 of file ReactionPath.h.

visible

bool visible

Visible on graph;.

Definition at line 40 of file ReactionPath.h.

Referenced by ReactionPathDiagram::exportToDot().

m_in

doublereal m_in

protected

Definition at line 77 of file ReactionPath.h.

m_out

doublereal m_out

protected

Definition at line 78 of file ReactionPath.h.

m_paths

std::vector<Path*> m_paths

protected

Definition at line 79 of file ReactionPath.h.

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The documentation for this class was generated from the following files:

• ReactionPath.h
• ReactionPath.cpp