ReactorNet.h

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//! @file ReactorNet.h

// This file is part of Cantera. See License.txt in the top-level directory or
// at http://www.cantera.org/license.txt for license and copyright information.

#ifndef CT_REACTORNET_H
#define CT_REACTORNET_H

#include "Reactor.h"
#include "cantera/numerics/FuncEval.h"
#include "cantera/numerics/Integrator.h"
#include "cantera/base/Array.h"

namespace Cantera
{

//! A class representing a network of connected reactors.
/*!
 *  This class is used to integrate the time-dependent governing equations for
 *  a network of reactors (Reactor, ConstPressureReactor) connected by various
 *  means, e.g. Wall, MassFlowController, Valve, PressureController.
 */
class ReactorNet : public FuncEval
{
public:
    ReactorNet();
    virtual ~ReactorNet() {};
    ReactorNet(const ReactorNet&) = delete;

    //! @name Methods to set up a simulation.
    //@{

    //! Set initial time. Default = 0.0 s. Restarts integration from this time
    //! using the current mixture state as the initial condition.
    void setInitialTime(double time);

    //! Set the maximum time step.
    void setMaxTimeStep(double maxstep);

    //! Set the maximum number of error test failures permitted by the CVODES
    //! integrator in a single time step.
    void setMaxErrTestFails(int nmax);

    //! Set the relative and absolute tolerances for the integrator.
    void setTolerances(double rtol, double atol);

    //! Set the relative and absolute tolerances for integrating the
    //! sensitivity equations.
    void setSensitivityTolerances(double rtol, double atol);

    //! Current value of the simulation time.
    doublereal time() {
        return m_time;
    }

    //! Relative tolerance.
    doublereal rtol() {
        return m_rtol;
    }

    //! Absolute integration tolerance
    doublereal atol() {
        return m_atols;
    }

    //! Relative sensitivity tolerance
    doublereal rtolSensitivity() const {
        return m_rtolsens;
    }

    //! Absolute sensitivity tolerance
    doublereal atolSensitivity() const {
        return m_atolsens;
    }

    /**
     * Advance the state of all reactors in time. Take as many internal
     * timesteps as necessary to reach *time*.
     * @param time Time to advance to (s).
     */
    void advance(doublereal time);

    //! Advance the state of all reactors in time.
    //! @deprecated The *time* argument to this function is deprecated and will
    //!     be removed after Cantera 2.3.
    double step(doublereal time=-999);

    //@}

    //! Add the reactor *r* to this reactor network.
    void addReactor(Reactor& r);

    //! Return a reference to the *n*-th reactor in this network. The reactor
    //! indices are determined by the order in which the reactors were added
    //! to the reactor network.
    Reactor& reactor(int n) {
        return *m_reactors[n];
    }

    //! Returns `true` if verbose logging output is enabled.
    bool verbose() const {
        return m_verbose;
    }

    //! Enable or disable verbose logging while setting up and integrating the
    //! reactor network.
    void setVerbose(bool v = true) {
        m_verbose = v;
        suppressErrors(!m_verbose);
    }

    //! Return a reference to the integrator.
    Integrator& integrator() {
        return *m_integ;
    }

    //! Update the state of all the reactors in the network to correspond to
    //! the values in the solution vector *y*.
    void updateState(doublereal* y);

    //! Return the sensitivity of the *k*-th solution component with respect to
    //! the *p*-th sensitivity parameter.
    /*!
     *  The sensitivity coefficient \f$ S_{ki} \f$ of solution variable \f$ y_k
     *  \f$ with respect to sensitivity parameter \f$ p_i \f$ is defined as:
     *
     *  \f[ S_{ki} = \frac{1}{y_k} \frac{\partial y_k}{\partial p_i} \f]
     *
     *  For reaction sensitivities, the parameter is a multiplier on the forward
     *  rate constant (and implicitly on the reverse rate constant for
     *  reversible reactions) which has a nominal value of 1.0, and the
     *  sensitivity is nondimensional.
     *
     *  For species enthalpy sensitivities, the parameter is a perturbation to
     *  the molar enthalpy of formation, such that the dimensions of the
     *  sensitivity are kmol/J.
     */
    double sensitivity(size_t k, size_t p);

    //! Return the sensitivity of the component named *component* with respect to
    //! the *p*-th sensitivity parameter.
    //! @copydetails ReactorNet::sensitivity(size_t, size_t)
    double sensitivity(const std::string& component, size_t p, int reactor=0) {
        size_t k = globalComponentIndex(component, reactor);
        return sensitivity(k, p);
    }

    //! Evaluate the Jacobian matrix for the reactor network.
    /*!
     *  @param[in] t Time at which to evaluate the Jacobian
     *  @param[in] y Global state vector at time *t*
     *  @param[out] ydot Time derivative of the state vector evaluated at *t*.
     *  @param[in] p sensitivity parameter vector (unused?)
     *  @param[out] j Jacobian matrix, size neq() by neq().
     */
    void evalJacobian(doublereal t, doublereal* y,
                      doublereal* ydot, doublereal* p, Array2D* j);

    // overloaded methods of class FuncEval
    virtual size_t neq() {
        return m_nv;
    }
    virtual void eval(doublereal t, doublereal* y,
                      doublereal* ydot, doublereal* p);

    //! @deprecated Use getState instead. To be removed after Cantera 2.3.
    virtual void getInitialConditions(doublereal t0, size_t leny,
                                      doublereal* y);
    virtual void getState(doublereal* y);

    virtual size_t nparams() {
        return m_sens_params.size();
    }

    //! Return the index corresponding to the component named *component* in the
    //! reactor with index *reactor* in the global state vector for the
    //! reactor network.
    size_t globalComponentIndex(const std::string& component, size_t reactor=0);

    //! Return the name of the i-th component of the global state vector. The
    //! name returned includes both the name of the reactor and the specific
    //! component, e.g. `'reactor1: CH4'`.
    std::string componentName(size_t i) const;

    //! Used by Reactor and Wall objects to register the addition of
    //! sensitivity parameters so that the ReactorNet can keep track of the
    //! order in which sensitivity parameters are added.
    //! @param name A name describing the parameter, e.g. the reaction string
    //! @param value The nominal value of the parameter
    //! @param scale A scaling factor to be applied to the sensitivity
    //!     coefficient
    //! @returns the index of this parameter in the vector of sensitivity
    //!     parameters (global across all reactors)
    size_t registerSensitivityParameter(const std::string& name, double value,
                                        double scale);

    //! The name of the p-th sensitivity parameter added to this ReactorNet.
    const std::string& sensitivityParameterName(size_t p) {
        return m_paramNames.at(p);
    }

    //! Reinitialize the integrator. Used to solve a new problem (different
    //! initial conditions) but with the same configuration of the reactor
    //! network. Can be called manually, or automatically after calling
    //! setInitialTime or modifying a reactor's contents.
    void reinitialize();

    //! Called to trigger integrator reinitialization before further
    //! integration.
    void setNeedsReinit() {
        m_integrator_init = false;
    }

protected:
    //! Initialize the reactor network. Called automatically the first time
    //! advance or step is called.
    void initialize();

    std::vector<Reactor*> m_reactors;
    std::unique_ptr<Integrator> m_integ;
    doublereal m_time;
    bool m_init;
    bool m_integrator_init; //!< True if integrator initialization is current
    size_t m_nv;

    //! m_start[n] is the starting point in the state vector for reactor n
    std::vector<size_t> m_start;

    vector_fp m_atol;
    doublereal m_rtol, m_rtolsens;
    doublereal m_atols, m_atolsens;

    //! Maximum integrator internal timestep. Default of 0.0 means infinity.
    doublereal m_maxstep;

    int m_maxErrTestFails;
    bool m_verbose;

    //! Names corresponding to each sensitivity parameter
    std::vector<std::string> m_paramNames;

    vector_fp m_ydot;
};
}

#endif