| _update_rates_C() | InterfaceKinetics | |
| _update_rates_phi() | InterfaceKinetics | |
| _update_rates_T() | InterfaceKinetics | |
| addPhase(ThermoPhase &thermo) | InterfaceKinetics | virtual |
| addReaction(shared_ptr< Reaction > r, bool resize=true) | InterfaceKinetics | virtual |
| advanceCoverages(doublereal tstep, double rtol=1.e-7, double atol=1.e-14, double maxStepSize=0, size_t maxSteps=20000, size_t maxErrTestFails=7) | InterfaceKinetics | |
| applyStickingCorrection(double T, double *kf) (defined in InterfaceKinetics) | InterfaceKinetics | protected |
| applyVoltageKfwdCorrection(doublereal *const kfwd) | InterfaceKinetics | |
| buildSurfaceArrhenius(size_t i, InterfaceReaction2 &r, bool replace) | InterfaceKinetics | protected |
| checkDuplicates(bool throw_err=true) const | Kinetics | virtual |
| checkDuplicateStoich(std::map< int, double > &r1, std::map< int, double > &r2) const | Kinetics | protected |
| checkPhaseArraySize(size_t mm) const | Kinetics | |
| checkPhaseIndex(size_t m) const | Kinetics | |
| checkReactionArraySize(size_t ii) const | Kinetics | |
| checkReactionBalance(const Reaction &R) | Kinetics | protected |
| checkReactionIndex(size_t m) const | Kinetics | |
| checkSpeciesArraySize(size_t mm) const | Kinetics | |
| checkSpeciesIndex(size_t k) const | Kinetics | |
| convertExchangeCurrentDensityFormulation(doublereal *const kfwd) | InterfaceKinetics | |
| creationRates_ddX() | Kinetics | |
| deltaElectricEnergy_ | InterfaceKinetics | protected |
| destructionRates_ddX() | Kinetics | |
| EdgeKinetics() | EdgeKinetics | inline |
| effectiveActivationEnergy_R(size_t irxn) | InterfaceKinetics | inline |
| effectivePreExponentialFactor(size_t irxn) | InterfaceKinetics | inline |
| effectiveTemperatureExponent(size_t irxn) | InterfaceKinetics | inline |
| electrochem_beta(size_t irxn) const | InterfaceKinetics | |
| fwdRatesOfProgress_ddX() | Kinetics | inlinevirtual |
| getActivityConcentrations(doublereal *const conc) | InterfaceKinetics | virtual |
| getCreationRates(doublereal *cdot) | Kinetics | virtual |
| getCreationRates_ddC(double *dwdot) | Kinetics | |
| getCreationRates_ddP(double *dwdot) | Kinetics | |
| getCreationRates_ddT(double *dwdot) | Kinetics | |
| getDeltaElectrochemPotentials(doublereal *deltaM) | InterfaceKinetics | virtual |
| getDeltaEnthalpy(doublereal *deltaH) | InterfaceKinetics | virtual |
| getDeltaEntropy(doublereal *deltaS) | InterfaceKinetics | virtual |
| getDeltaGibbs(doublereal *deltaG) | InterfaceKinetics | virtual |
| getDeltaSSEnthalpy(doublereal *deltaH) | InterfaceKinetics | virtual |
| getDeltaSSEntropy(doublereal *deltaS) | InterfaceKinetics | virtual |
| getDeltaSSGibbs(doublereal *deltaG) | InterfaceKinetics | virtual |
| getDerivativeSettings(AnyMap &settings) const | Kinetics | inlinevirtual |
| getDestructionRates(doublereal *ddot) | Kinetics | virtual |
| getDestructionRates_ddC(double *dwdot) | Kinetics | |
| getDestructionRates_ddP(double *dwdot) | Kinetics | |
| getDestructionRates_ddT(double *dwdot) | Kinetics | |
| getEquilibriumConstants(doublereal *kc) | InterfaceKinetics | virtual |
| getFwdRateConstants(doublereal *kfwd) | InterfaceKinetics | virtual |
| getFwdRateConstants_ddC(double *dkfwd) | Kinetics | inlinevirtual |
| getFwdRateConstants_ddP(double *dkfwd) | Kinetics | inlinevirtual |
| getFwdRateConstants_ddT(double *dkfwd) | Kinetics | inlinevirtual |
| getFwdRatesOfProgress(doublereal *fwdROP) | Kinetics | virtual |
| getFwdRatesOfProgress_ddC(double *drop) | Kinetics | inlinevirtual |
| getFwdRatesOfProgress_ddP(double *drop) | Kinetics | inlinevirtual |
| getFwdRatesOfProgress_ddT(double *drop) | Kinetics | inlinevirtual |
| getNetProductionRates(doublereal *wdot) | Kinetics | virtual |
| getNetProductionRates_ddC(double *dwdot) | Kinetics | |
| getNetProductionRates_ddP(double *dwdot) | Kinetics | |
| getNetProductionRates_ddT(double *dwdot) | Kinetics | |
| getNetRatesOfProgress(doublereal *netROP) | Kinetics | virtual |
| getNetRatesOfProgress_ddC(double *drop) | Kinetics | inlinevirtual |
| getNetRatesOfProgress_ddP(double *drop) | Kinetics | inlinevirtual |
| getNetRatesOfProgress_ddT(double *drop) | Kinetics | inlinevirtual |
| getReactionDelta(const double *property, double *deltaProperty) const | Kinetics | virtual |
| getRevRateConstants(doublereal *krev, bool doIrreversible=false) | InterfaceKinetics | virtual |
| getRevRatesOfProgress(doublereal *revROP) | Kinetics | virtual |
| getRevRatesOfProgress_ddC(double *drop) | Kinetics | inlinevirtual |
| getRevRatesOfProgress_ddP(double *drop) | Kinetics | inlinevirtual |
| getRevRatesOfProgress_ddT(double *drop) | Kinetics | inlinevirtual |
| getRevReactionDelta(const double *g, double *dg) const | Kinetics | virtual |
| getThirdBodyConcentrations(double *concm) | Kinetics | inlinevirtual |
| init() | InterfaceKinetics | virtual |
| InterfaceKinetics(ThermoPhase *thermo=0) | InterfaceKinetics | |
| invalidateCache() (defined in Kinetics) | Kinetics | inlinevirtual |
| isReversible(size_t i) | InterfaceKinetics | inlinevirtual |
| Kinetics() | Kinetics | |
| Kinetics(const Kinetics &)=delete | Kinetics | |
| kineticsSpeciesIndex(size_t k, size_t n) const | Kinetics | inline |
| kineticsSpeciesIndex(const std::string &nm) const | Kinetics | |
| kineticsSpeciesIndex(const std::string &nm, const std::string &ph) const | Kinetics | |
| kineticsSpeciesName(size_t k) const | Kinetics | |
| kineticsType() const | EdgeKinetics | inlinevirtual |
| m_actConc | InterfaceKinetics | protected |
| m_beta | InterfaceKinetics | protected |
| m_cache | Kinetics | protected |
| m_conc | InterfaceKinetics | protected |
| m_ctrxn | InterfaceKinetics | protected |
| m_ctrxn_ecdf | InterfaceKinetics | protected |
| m_delta_gibbs0 | Kinetics | protected |
| m_deltaG | InterfaceKinetics | protected |
| m_deltaG0 | InterfaceKinetics | protected |
| m_dH | Kinetics | protected |
| m_grt | InterfaceKinetics | protected |
| m_has_coverage_dependence | InterfaceKinetics | protected |
| m_has_electrochem_rxns | InterfaceKinetics | protected |
| m_has_exchange_current_density_formulation | InterfaceKinetics | protected |
| m_integrator | InterfaceKinetics | protected |
| m_interfaceRates | InterfaceKinetics | protected |
| m_interfaceTypes | InterfaceKinetics | protected |
| m_ioFlag (defined in InterfaceKinetics) | InterfaceKinetics | protected |
| m_irrev | InterfaceKinetics | protected |
| m_kk | Kinetics | protected |
| m_logtemp | InterfaceKinetics | protected |
| m_mindim | Kinetics | protected |
| m_mu | InterfaceKinetics | protected |
| m_mu0 | InterfaceKinetics | protected |
| m_mu0_Kc | InterfaceKinetics | protected |
| m_nDim | InterfaceKinetics | protected |
| m_perturb | Kinetics | protected |
| m_phaseExists | InterfaceKinetics | protected |
| m_phaseExistsCheck | InterfaceKinetics | protected |
| m_phaseindex | Kinetics | protected |
| m_phaseIsStable | InterfaceKinetics | protected |
| m_phi | InterfaceKinetics | protected |
| m_pot | InterfaceKinetics | protected |
| m_ProdStanConcReac | InterfaceKinetics | protected |
| m_productStoich | Kinetics | protected |
| m_rates | InterfaceKinetics | protected |
| m_rbuf | Kinetics | protected |
| m_reactantStoich | Kinetics | protected |
| m_reactions | Kinetics | protected |
| m_ready | Kinetics | protected |
| m_redo_rates (defined in InterfaceKinetics) | InterfaceKinetics | protected |
| m_revindex | InterfaceKinetics | protected |
| m_revProductStoich | Kinetics | protected |
| m_rfn | Kinetics | protected |
| m_rkcn | Kinetics | protected |
| m_root | Kinetics | protected |
| m_ROP_ok (defined in InterfaceKinetics) | InterfaceKinetics | protected |
| m_ropf | Kinetics | protected |
| m_ropnet | Kinetics | protected |
| m_ropr | Kinetics | protected |
| m_rxnphase | Kinetics | protected |
| m_rxnPhaseIsProduct | InterfaceKinetics | protected |
| m_rxnPhaseIsReactant | InterfaceKinetics | protected |
| m_skipUndeclaredSpecies | Kinetics | protected |
| m_skipUndeclaredThirdBodies | Kinetics | protected |
| m_StandardConc | InterfaceKinetics | protected |
| m_start | Kinetics | protected |
| m_stickingData | InterfaceKinetics | protected |
| m_stoichMatrix | Kinetics | protected |
| m_surf | InterfaceKinetics | protected |
| m_surfphase | Kinetics | protected |
| m_temp | InterfaceKinetics | protected |
| m_thermo | Kinetics | protected |
| modifyReaction(size_t i, shared_ptr< Reaction > rNew) | InterfaceKinetics | virtual |
| multiplier(size_t i) const | Kinetics | inline |
| netProductionRates_ddX() | Kinetics | |
| netRatesOfProgress_ddX() | Kinetics | inlinevirtual |
| nPhases() const | Kinetics | inline |
| nReactions() const | Kinetics | inline |
| nTotalSpecies() const | Kinetics | inline |
| operator=(const Kinetics &)=delete (defined in Kinetics) | Kinetics | |
| parameters() | Kinetics | |
| phaseExistence(const size_t iphase) const | InterfaceKinetics | |
| phaseIndex(const std::string &ph) const | Kinetics | inline |
| phaseStability(const size_t iphase) const | InterfaceKinetics | |
| productOrder(int k, int i) const | Kinetics | inlinevirtual |
| productStoichCoeff(size_t k, size_t i) const | Kinetics | virtual |
| productStoichCoeffs() const | Kinetics | inline |
| productString(size_t i) const | Kinetics | |
| reactantOrder(size_t k, size_t i) const | Kinetics | inlinevirtual |
| reactantStoichCoeff(size_t k, size_t i) const | Kinetics | virtual |
| reactantStoichCoeffs() const | Kinetics | inline |
| reactantString(size_t i) const | Kinetics | |
| reaction(size_t i) | Kinetics | |
| reaction(size_t i) const (defined in Kinetics) | Kinetics | |
| reactionEnthalpy(const Composition &reactants, const Composition &products) | Kinetics | virtual |
| reactionPhaseIndex() const | Kinetics | inline |
| reactionString(size_t i) const | Kinetics | |
| reactionType(size_t i) const | Kinetics | virtual |
| reactionTypeStr(size_t i) const | Kinetics | virtual |
| resizeReactions() | InterfaceKinetics | virtual |
| resizeSpecies() | InterfaceKinetics | virtual |
| revProductStoichCoeffs() const | Kinetics | inline |
| revRatesOfProgress_ddX() | Kinetics | inlinevirtual |
| selectPhase(const double *data, const ThermoPhase *phase, double *phase_data) | Kinetics | |
| setDerivativeSettings(const AnyMap &settings) | Kinetics | inlinevirtual |
| setElectricPotential(int n, doublereal V) | InterfaceKinetics | |
| setIOFlag(int ioFlag) (defined in InterfaceKinetics) | InterfaceKinetics | |
| setMultiplier(size_t i, doublereal f) | Kinetics | inlinevirtual |
| setPhaseExistence(const size_t iphase, const int exists) | InterfaceKinetics | |
| setPhaseStability(const size_t iphase, const int isStable) | InterfaceKinetics | |
| setRoot(std::shared_ptr< Solution > root) | Kinetics | inlinevirtual |
| skipUndeclaredSpecies(bool skip) | Kinetics | inline |
| skipUndeclaredSpecies() const (defined in Kinetics) | Kinetics | inline |
| skipUndeclaredThirdBodies(bool skip) | Kinetics | inline |
| skipUndeclaredThirdBodies() const (defined in Kinetics) | Kinetics | inline |
| solvePseudoSteadyStateProblem(int ifuncOverride=-1, doublereal timeScaleOverride=1.0) | InterfaceKinetics | |
| speciesPhase(const std::string &nm) | Kinetics | |
| speciesPhase(const std::string &nm) const (defined in Kinetics) | Kinetics | |
| speciesPhase(size_t k) | Kinetics | inline |
| speciesPhaseIndex(size_t k) const | Kinetics | |
| surfacePhaseIndex() const | Kinetics | inline |
| thermo(size_t n=0) | Kinetics | inline |
| thermo(size_t n=0) const (defined in Kinetics) | Kinetics | inline |
| thirdBodyConcentrations() const | Kinetics | inlinevirtual |
| updateExchangeCurrentQuantities() | InterfaceKinetics | |
| updateKc() | InterfaceKinetics | |
| updateMu0() | InterfaceKinetics | virtual |
| updateROP() | InterfaceKinetics | virtual |
| ~InterfaceKinetics() (defined in InterfaceKinetics) | InterfaceKinetics | virtual |
| ~Kinetics() (defined in Kinetics) | Kinetics | virtual |
