addReaction(shared_ptr< Reaction > r, bool resize=true) | Kinetics | virtual |
addThermo(shared_ptr< ThermoPhase > thermo) | Kinetics | virtual |
checkDuplicates(bool throw_err=true) const | Kinetics | virtual |
checkDuplicateStoich(map< int, double > &r1, map< int, double > &r2) const | Kinetics | protected |
checkPhaseArraySize(size_t mm) const | Kinetics | |
checkPhaseIndex(size_t m) const | Kinetics | |
checkReactionArraySize(size_t ii) const | Kinetics | |
checkReactionIndex(size_t m) const | Kinetics | |
checkSpeciesArraySize(size_t mm) const | Kinetics | |
checkSpeciesIndex(size_t k) const | Kinetics | |
creationRates_ddCi() | Kinetics | |
creationRates_ddX() | Kinetics | |
destructionRates_ddCi() | Kinetics | |
destructionRates_ddX() | Kinetics | |
fwdRatesOfProgress_ddCi() | Kinetics | inlinevirtual |
fwdRatesOfProgress_ddX() | Kinetics | inlinevirtual |
getActivityConcentrations(double *const conc) | Kinetics | inlinevirtual |
getCreationRates(double *cdot) | Kinetics | virtual |
getCreationRates_ddC(double *dwdot) | Kinetics | |
getCreationRates_ddP(double *dwdot) | Kinetics | |
getCreationRates_ddT(double *dwdot) | Kinetics | |
getDeltaElectrochemPotentials(double *deltaM) | Kinetics | inlinevirtual |
getDeltaEnthalpy(double *deltaH) | Kinetics | inlinevirtual |
getDeltaEntropy(double *deltaS) | Kinetics | inlinevirtual |
getDeltaGibbs(double *deltaG) | Kinetics | inlinevirtual |
getDeltaSSEnthalpy(double *deltaH) | Kinetics | inlinevirtual |
getDeltaSSEntropy(double *deltaS) | Kinetics | inlinevirtual |
getDeltaSSGibbs(double *deltaG) | Kinetics | inlinevirtual |
getDerivativeSettings(AnyMap &settings) const | Kinetics | inlinevirtual |
getDestructionRates(double *ddot) | Kinetics | virtual |
getDestructionRates_ddC(double *dwdot) | Kinetics | |
getDestructionRates_ddP(double *dwdot) | Kinetics | |
getDestructionRates_ddT(double *dwdot) | Kinetics | |
getEquilibriumConstants(double *kc) | Kinetics | inlinevirtual |
getFwdRateConstants(double *kfwd) | Kinetics | inlinevirtual |
getFwdRateConstants_ddC(double *dkfwd) | Kinetics | inlinevirtual |
getFwdRateConstants_ddP(double *dkfwd) | Kinetics | inlinevirtual |
getFwdRateConstants_ddT(double *dkfwd) | Kinetics | inlinevirtual |
getFwdRatesOfProgress(double *fwdROP) | Kinetics | virtual |
getFwdRatesOfProgress_ddC(double *drop) | Kinetics | inlinevirtual |
getFwdRatesOfProgress_ddP(double *drop) | Kinetics | inlinevirtual |
getFwdRatesOfProgress_ddT(double *drop) | Kinetics | inlinevirtual |
getNetProductionRates(double *wdot) | Kinetics | virtual |
getNetProductionRates_ddC(double *dwdot) | Kinetics | |
getNetProductionRates_ddP(double *dwdot) | Kinetics | |
getNetProductionRates_ddT(double *dwdot) | Kinetics | |
getNetRatesOfProgress(double *netROP) | Kinetics | virtual |
getNetRatesOfProgress_ddC(double *drop) | Kinetics | inlinevirtual |
getNetRatesOfProgress_ddP(double *drop) | Kinetics | inlinevirtual |
getNetRatesOfProgress_ddT(double *drop) | Kinetics | inlinevirtual |
getReactionDelta(const double *property, double *deltaProperty) const | Kinetics | virtual |
getRevRateConstants(double *krev, bool doIrreversible=false) | Kinetics | inlinevirtual |
getRevRatesOfProgress(double *revROP) | Kinetics | virtual |
getRevRatesOfProgress_ddC(double *drop) | Kinetics | inlinevirtual |
getRevRatesOfProgress_ddP(double *drop) | Kinetics | inlinevirtual |
getRevRatesOfProgress_ddT(double *drop) | Kinetics | inlinevirtual |
getRevReactionDelta(const double *g, double *dg) const | Kinetics | virtual |
getThirdBodyConcentrations(double *concm) | Kinetics | inlinevirtual |
init() | Kinetics | inlinevirtual |
invalidateCache() (defined in Kinetics) | Kinetics | inlinevirtual |
isReversible(size_t i) | Kinetics | inlinevirtual |
Kinetics()=default | Kinetics | |
Kinetics(const Kinetics &)=delete | Kinetics | |
kineticsSpeciesIndex(size_t k, size_t n) const | Kinetics | inline |
kineticsSpeciesIndex(const string &nm) const | Kinetics | |
kineticsSpeciesName(size_t k) const | Kinetics | |
kineticsType() const | Kinetics | inlinevirtual |
m_cache | Kinetics | protected |
m_delta_gibbs0 | Kinetics | protected |
m_dH | Kinetics | protected |
m_hasUndeclaredThirdBodies | Kinetics | protected |
m_kk | Kinetics | protected |
m_mindim | Kinetics | protected |
m_perturb | Kinetics | protected |
m_phaseindex | Kinetics | protected |
m_productStoich | Kinetics | protected |
m_rbuf | Kinetics | protected |
m_reactantStoich | Kinetics | protected |
m_reactions | Kinetics | protected |
m_ready | Kinetics | protected |
m_revProductStoich | Kinetics | protected |
m_rfn | Kinetics | protected |
m_rkcn | Kinetics | protected |
m_root | Kinetics | protected |
m_ropf | Kinetics | protected |
m_ropnet | Kinetics | protected |
m_ropr | Kinetics | protected |
m_skipUndeclaredSpecies | Kinetics | protected |
m_skipUndeclaredThirdBodies | Kinetics | protected |
m_start | Kinetics | protected |
m_stoichMatrix | Kinetics | protected |
m_thermo | Kinetics | protected |
modifyReaction(size_t i, shared_ptr< Reaction > rNew) | Kinetics | virtual |
multiplier(size_t i) const | Kinetics | inline |
netProductionRates_ddCi() | Kinetics | |
netProductionRates_ddX() | Kinetics | |
netRatesOfProgress_ddCi() | Kinetics | inlinevirtual |
netRatesOfProgress_ddX() | Kinetics | inlinevirtual |
nPhases() const | Kinetics | inline |
nReactions() const | Kinetics | inline |
nTotalSpecies() const | Kinetics | inline |
operator=(const Kinetics &)=delete (defined in Kinetics) | Kinetics | |
parameters() | Kinetics | |
phaseIndex(const string &ph) const | Kinetics | inline |
productOrder(int k, int i) const | Kinetics | inlinevirtual |
productStoichCoeff(size_t k, size_t i) const | Kinetics | virtual |
productStoichCoeffs() const | Kinetics | inline |
reactantOrder(size_t k, size_t i) const | Kinetics | inlinevirtual |
reactantStoichCoeff(size_t k, size_t i) const | Kinetics | virtual |
reactantStoichCoeffs() const | Kinetics | inline |
reaction(size_t i) | Kinetics | |
reaction(size_t i) const (defined in Kinetics) | Kinetics | |
reactionPhase() const | Kinetics | |
reactionPhaseIndex() const | Kinetics | |
resizeReactions() | Kinetics | virtual |
resizeSpecies() | Kinetics | virtual |
revProductStoichCoeffs() const | Kinetics | inline |
revRatesOfProgress_ddCi() | Kinetics | inlinevirtual |
revRatesOfProgress_ddX() | Kinetics | inlinevirtual |
root() const | Kinetics | inline |
setDerivativeSettings(const AnyMap &settings) | Kinetics | inlinevirtual |
setMultiplier(size_t i, double f) | Kinetics | inlinevirtual |
setRoot(shared_ptr< Solution > root) | Kinetics | inlinevirtual |
skipUndeclaredSpecies(bool skip) | Kinetics | inline |
skipUndeclaredSpecies() const (defined in Kinetics) | Kinetics | inline |
skipUndeclaredThirdBodies(bool skip) | Kinetics | inline |
skipUndeclaredThirdBodies() const (defined in Kinetics) | Kinetics | inline |
speciesPhase(const string &nm) | Kinetics | |
speciesPhase(const string &nm) const (defined in Kinetics) | Kinetics | |
speciesPhase(size_t k) | Kinetics | inline |
speciesPhaseIndex(size_t k) const | Kinetics | |
thermo(size_t n=0) | Kinetics | inline |
thermo(size_t n=0) const (defined in Kinetics) | Kinetics | inline |
thirdBodyConcentrations() const | Kinetics | inlinevirtual |
updateROP() (defined in Kinetics) | Kinetics | inlineprotectedvirtual |
~Kinetics()=default (defined in Kinetics) | Kinetics | virtual |