| addReaction(shared_ptr< Reaction > r, bool resize=true) override | BulkKinetics | virtual |
| addThermo(shared_ptr< ThermoPhase > thermo) | Kinetics | virtual |
| addThirdBody(shared_ptr< Reaction > r) (defined in BulkKinetics) | BulkKinetics | |
| applyEquilibriumConstants(double *rop) | BulkKinetics | protected |
| applyEquilibriumConstants_ddT(double *drkcn) | BulkKinetics | protected |
| assertDerivativesValid(const string &name) | BulkKinetics | protected |
| BulkKinetics() (defined in BulkKinetics) | BulkKinetics | |
| calculateCompositionDerivatives(StoichManagerN &stoich, const vector< double > &in, bool ddX=true) | BulkKinetics | protected |
| checkDuplicates(bool throw_err=true) const | Kinetics | virtual |
| checkDuplicateStoich(map< int, double > &r1, map< int, double > &r2) const | Kinetics | protected |
| checkPhaseArraySize(size_t mm) const | Kinetics | |
| checkPhaseIndex(size_t m) const | Kinetics | |
| checkReactionArraySize(size_t ii) const | Kinetics | |
| checkReactionIndex(size_t m) const | Kinetics | |
| checkSpeciesArraySize(size_t mm) const | Kinetics | |
| checkSpeciesIndex(size_t k) const | Kinetics | |
| creationRates_ddCi() | Kinetics | |
| creationRates_ddX() | Kinetics | |
| destructionRates_ddCi() | Kinetics | |
| destructionRates_ddX() | Kinetics | |
| fwdRatesOfProgress_ddCi() override | BulkKinetics | virtual |
| fwdRatesOfProgress_ddX() override | BulkKinetics | virtual |
| getActivityConcentrations(double *const conc) | Kinetics | inlinevirtual |
| getCreationRates(double *cdot) | Kinetics | virtual |
| getCreationRates_ddC(double *dwdot) | Kinetics | |
| getCreationRates_ddP(double *dwdot) | Kinetics | |
| getCreationRates_ddT(double *dwdot) | Kinetics | |
| getDeltaElectrochemPotentials(double *deltaM) | Kinetics | inlinevirtual |
| getDeltaEnthalpy(double *deltaH) override | BulkKinetics | virtual |
| getDeltaEntropy(double *deltaS) override | BulkKinetics | virtual |
| getDeltaGibbs(double *deltaG) override | BulkKinetics | virtual |
| getDeltaSSEnthalpy(double *deltaH) override | BulkKinetics | virtual |
| getDeltaSSEntropy(double *deltaS) override | BulkKinetics | virtual |
| getDeltaSSGibbs(double *deltaG) override | BulkKinetics | virtual |
| getDerivativeSettings(AnyMap &settings) const override | BulkKinetics | virtual |
| getDestructionRates(double *ddot) | Kinetics | virtual |
| getDestructionRates_ddC(double *dwdot) | Kinetics | |
| getDestructionRates_ddP(double *dwdot) | Kinetics | |
| getDestructionRates_ddT(double *dwdot) | Kinetics | |
| getEquilibriumConstants(double *kc) override | BulkKinetics | virtual |
| getFwdRateConstants(double *kfwd) override | BulkKinetics | virtual |
| getFwdRateConstants_ddC(double *dkfwd) override | BulkKinetics | virtual |
| getFwdRateConstants_ddP(double *dkfwd) override | BulkKinetics | virtual |
| getFwdRateConstants_ddT(double *dkfwd) override | BulkKinetics | virtual |
| getFwdRatesOfProgress(double *fwdROP) | Kinetics | virtual |
| getFwdRatesOfProgress_ddC(double *drop) override | BulkKinetics | virtual |
| getFwdRatesOfProgress_ddP(double *drop) override | BulkKinetics | virtual |
| getFwdRatesOfProgress_ddT(double *drop) override | BulkKinetics | virtual |
| getNetProductionRates(double *wdot) | Kinetics | virtual |
| getNetProductionRates_ddC(double *dwdot) | Kinetics | |
| getNetProductionRates_ddP(double *dwdot) | Kinetics | |
| getNetProductionRates_ddT(double *dwdot) | Kinetics | |
| getNetRatesOfProgress(double *netROP) | Kinetics | virtual |
| getNetRatesOfProgress_ddC(double *drop) override | BulkKinetics | virtual |
| getNetRatesOfProgress_ddP(double *drop) override | BulkKinetics | virtual |
| getNetRatesOfProgress_ddT(double *drop) override | BulkKinetics | virtual |
| getReactionDelta(const double *property, double *deltaProperty) const | Kinetics | virtual |
| getRevRateConstants(double *krev, bool doIrreversible=false) override | BulkKinetics | virtual |
| getRevRatesOfProgress(double *revROP) | Kinetics | virtual |
| getRevRatesOfProgress_ddC(double *drop) override | BulkKinetics | virtual |
| getRevRatesOfProgress_ddP(double *drop) override | BulkKinetics | virtual |
| getRevRatesOfProgress_ddT(double *drop) override | BulkKinetics | virtual |
| getRevReactionDelta(const double *g, double *dg) const | Kinetics | virtual |
| getThirdBodyConcentrations(double *concm) override | BulkKinetics | virtual |
| init() | Kinetics | inlinevirtual |
| invalidateCache() override (defined in BulkKinetics) | BulkKinetics | virtual |
| isReversible(size_t i) override | BulkKinetics | virtual |
| Kinetics()=default | Kinetics | |
| Kinetics(const Kinetics &)=delete | Kinetics | |
| kineticsSpeciesIndex(size_t k, size_t n) const | Kinetics | inline |
| kineticsSpeciesIndex(const string &nm) const | Kinetics | |
| kineticsSpeciesName(size_t k) const | Kinetics | |
| kineticsType() const override | BulkKinetics | inlinevirtual |
| m_act_conc | BulkKinetics | protected |
| m_bulk_rates | BulkKinetics | protected |
| m_bulk_types | BulkKinetics | protected |
| m_cache | Kinetics | protected |
| m_concm | BulkKinetics | protected |
| m_delta_gibbs0 | Kinetics | protected |
| m_dH | Kinetics | protected |
| m_dn | BulkKinetics | protected |
| m_grt | BulkKinetics | protected |
| m_hasUndeclaredThirdBodies | Kinetics | protected |
| m_irrev | BulkKinetics | protected |
| m_jac_rtol_delta (defined in BulkKinetics) | BulkKinetics | protected |
| m_jac_skip_falloff (defined in BulkKinetics) | BulkKinetics | protected |
| m_jac_skip_third_bodies | BulkKinetics | protected |
| m_kf0 | BulkKinetics | protected |
| m_kk | Kinetics | protected |
| m_mindim | Kinetics | protected |
| m_multi_concm | BulkKinetics | protected |
| m_perturb | Kinetics | protected |
| m_phaseindex | Kinetics | protected |
| m_phys_conc | BulkKinetics | protected |
| m_productStoich | Kinetics | protected |
| m_rbuf | Kinetics | protected |
| m_rbuf0 | BulkKinetics | protected |
| m_rbuf1 (defined in BulkKinetics) | BulkKinetics | protected |
| m_rbuf2 (defined in BulkKinetics) | BulkKinetics | protected |
| m_reactantStoich | Kinetics | protected |
| m_reactions | Kinetics | protected |
| m_ready | Kinetics | protected |
| m_revindex | BulkKinetics | protected |
| m_revProductStoich | Kinetics | protected |
| m_rfn | Kinetics | protected |
| m_rkcn | Kinetics | protected |
| m_root | Kinetics | protected |
| m_ROP_ok (defined in BulkKinetics) | BulkKinetics | protected |
| m_ropf | Kinetics | protected |
| m_ropnet | Kinetics | protected |
| m_ropr | Kinetics | protected |
| m_sbuf0 (defined in BulkKinetics) | BulkKinetics | protected |
| m_skipUndeclaredSpecies | Kinetics | protected |
| m_skipUndeclaredThirdBodies | Kinetics | protected |
| m_start | Kinetics | protected |
| m_state (defined in BulkKinetics) | BulkKinetics | protected |
| m_stoichMatrix | Kinetics | protected |
| m_thermo | Kinetics | protected |
| modifyReaction(size_t i, shared_ptr< Reaction > rNew) override | BulkKinetics | virtual |
| multiplier(size_t i) const | Kinetics | inline |
| netProductionRates_ddCi() | Kinetics | |
| netProductionRates_ddX() | Kinetics | |
| netRatesOfProgress_ddCi() override | BulkKinetics | virtual |
| netRatesOfProgress_ddX() override | BulkKinetics | virtual |
| nPhases() const | Kinetics | inline |
| nReactions() const | Kinetics | inline |
| nTotalSpecies() const | Kinetics | inline |
| operator=(const Kinetics &)=delete (defined in Kinetics) | Kinetics | |
| parameters() | Kinetics | |
| phaseIndex(const string &ph) const | Kinetics | inline |
| process_ddC(StoichManagerN &stoich, const vector< double > &in, double *drop, bool mass_action=true) | BulkKinetics | protected |
| process_ddP(const vector< double > &in, double *drop) | BulkKinetics | protected |
| process_ddT(const vector< double > &in, double *drop) | BulkKinetics | protected |
| processThirdBodies(double *rop) | BulkKinetics | protected |
| productOrder(int k, int i) const | Kinetics | inlinevirtual |
| productStoichCoeff(size_t k, size_t i) const | Kinetics | virtual |
| productStoichCoeffs() const | Kinetics | inline |
| reactantOrder(size_t k, size_t i) const | Kinetics | inlinevirtual |
| reactantStoichCoeff(size_t k, size_t i) const | Kinetics | virtual |
| reactantStoichCoeffs() const | Kinetics | inline |
| reaction(size_t i) | Kinetics | |
| reaction(size_t i) const (defined in Kinetics) | Kinetics | |
| reactionPhase() const | Kinetics | |
| reactionPhaseIndex() const | Kinetics | |
| resizeReactions() override | BulkKinetics | virtual |
| resizeSpecies() override | BulkKinetics | virtual |
| revProductStoichCoeffs() const | Kinetics | inline |
| revRatesOfProgress_ddCi() override | BulkKinetics | virtual |
| revRatesOfProgress_ddX() override | BulkKinetics | virtual |
| root() const | Kinetics | inline |
| setDerivativeSettings(const AnyMap &settings) override | BulkKinetics | virtual |
| setMultiplier(size_t i, double f) override | BulkKinetics | virtual |
| setRoot(shared_ptr< Solution > root) | Kinetics | inlinevirtual |
| skipUndeclaredSpecies(bool skip) | Kinetics | inline |
| skipUndeclaredSpecies() const (defined in Kinetics) | Kinetics | inline |
| skipUndeclaredThirdBodies(bool skip) | Kinetics | inline |
| skipUndeclaredThirdBodies() const (defined in Kinetics) | Kinetics | inline |
| speciesPhase(const string &nm) | Kinetics | |
| speciesPhase(const string &nm) const (defined in Kinetics) | Kinetics | |
| speciesPhase(size_t k) | Kinetics | inline |
| speciesPhaseIndex(size_t k) const | Kinetics | |
| thermo(size_t n=0) | Kinetics | inline |
| thermo(size_t n=0) const (defined in Kinetics) | Kinetics | inline |
| thirdBodyConcentrations() const override | BulkKinetics | inlinevirtual |
| updateROP() override (defined in BulkKinetics) | BulkKinetics | virtual |
| ~Kinetics()=default (defined in Kinetics) | Kinetics | virtual |
1.9.1